Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23f01
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78542-6|CAB01749.2|  695|Caenorhabditis elegans Hypothetical pr...    31   0.50 
Z81110-3|CAB03257.1|  323|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AC006670-2|ABC71822.1|  901|Caenorhabditis elegans Patched relat...    28   4.6  
AL032639-3|CAA21635.1|  283|Caenorhabditis elegans Hypothetical ...    28   6.1  

>Z78542-6|CAB01749.2|  695|Caenorhabditis elegans Hypothetical
           protein F20D1.7 protein.
          Length = 695

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 156 IKGANDKCSLKASLDIQNRGPNRIVELNEAKCKQKV-IVHRCNIFTRTAENIYD 314
           IKG    CS   S D+Q+ G   IV+ N+A CK K+  V + +   +T E   D
Sbjct: 346 IKGTQLDCSC-TSRDMQDYGAITIVDWNDATCKTKIGAVQKLSHLEKTGEPCRD 398


>Z81110-3|CAB03257.1|  323|Caenorhabditis elegans Hypothetical
           protein T01D3.4 protein.
          Length = 323

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
 Frame = +3

Query: 369 NNHLVNVSKDVLILLCFLIANFIVLMIIIFNISCDVYFG--IKQAATRRRSTSF*QLVIN 542
           N++  NV+ D+L L+C ++A F V++ I+  I   + F    + A+++RR  +    + +
Sbjct: 168 NDNCDNVNLDILKLICLVLAVFNVVVQILNLIKIKLMFSKQSRTASSQRRRRTLRLFIQS 227

Query: 543 LITDVYF 563
           +I D  +
Sbjct: 228 VIQDCLY 234


>AC006670-2|ABC71822.1|  901|Caenorhabditis elegans Patched related
           family protein12, isoform a protein.
          Length = 901

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 504 RRRSTSF*QLVINLITDVYF*ILVVFIQI 590
           +RR TSF +  I+LIT+ +F I VV + I
Sbjct: 492 KRRVTSFLENYISLITNAFFQIFVVLVWI 520


>AL032639-3|CAA21635.1|  283|Caenorhabditis elegans Hypothetical
           protein Y38F1A.2 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 294 TAENIYDKCASYNLRYCPFGRFVKSNNHLVNVSKDVLILLCFLIANF 434
           T+E   D     N+R   + R    N  +++  +D+ IL+ +LI NF
Sbjct: 165 TSEETDDHIQENNIRIDDYNRRFSINRPVLDYIRDIPILIPYLIRNF 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,308,054
Number of Sequences: 27780
Number of extensions: 270439
Number of successful extensions: 667
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)