Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23e24
(622 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 27 2.2
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi... 27 2.9
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 27 2.9
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 26 3.8
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 3.8
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 26 3.8
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 3.8
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 26 5.1
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 26 5.1
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 26 5.1
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 6.7
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 25 6.7
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 8.8
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 216 GTSSVITTSSEIDSLGSAVSADNSFSNHNTLPLTWS 109
GT+S S DS+GS S N +NHN L W+
Sbjct: 46 GTNSFNGKPSVHDSVGSDASVSNGHNNHNESSL-WT 80
>SPAC1851.02 |||1-acylglycerol-3-phosphate
O-acyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 279
Score = 26.6 bits (56), Expect = 2.9
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +1
Query: 463 YTLKKCVQFKIEWFACKT 516
+TL KC+++ +FAC T
Sbjct: 25 FTLPKCIRYHFRYFACHT 42
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 310 SAINKYSQDEDNNYSDDHNNGESNN 236
+ I + SQ D++ DD NN ESN+
Sbjct: 378 NGIQEDSQSTDDSSKDDDNNSESND 402
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 3.8
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Frame = -1
Query: 289 QDEDNNYSDDHNNGESNNSCYRQRGNFFCYHDLLGNR*LGIR--CISRQLF 143
+ NNY G SN YR F + D G +G R + RQLF
Sbjct: 87 EGRQNNYRGGREGGYSNGGGYRNNRGFGQWRD--GQHVIGARNTLLERQLF 135
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -1
Query: 325 NNSLLSAINKYSQDEDNNYSDDHNNGESNNS 233
++S +S + + ED+N +D+ N+ +SNN+
Sbjct: 512 SSSNISNVANFDSAEDDNDNDNDNDRDSNNN 542
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -1
Query: 325 NNSLLSAINKYSQDEDNNYSDDHNNGESNNS 233
N S I+ ++ E +++ +DH N +SNN+
Sbjct: 34 NESTNDVIDNHTDTEIDDHDNDHENLDSNNN 64
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -1
Query: 325 NNSLLSAINKYSQDEDNNYSDDHNNGESNNS 233
++S +S + + ED+N +D+ N+ +SNN+
Sbjct: 512 SSSNISNVANFDSAEDDNDNDNDNDRDSNNN 542
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 473 FKV*SIVLRPVVDLCQSPPCY 411
F + ++ + VVDLCQS P Y
Sbjct: 861 FNILGLMSQKVVDLCQSEPIY 881
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 295 YSQDEDNNYSDDHNNGESNNSCYRQRGNFFCYHDLLG 185
Y+ + + NY +++N +NN+ Q GN LLG
Sbjct: 613 YNNNNNQNYGNNNNQNYNNNNNSSQGGNSQGGSGLLG 649
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 5.1
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 289 QDEDNNYSDDHNN 251
Q D+NYSD HNN
Sbjct: 422 QQSDSNYSDHHNN 434
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -1
Query: 304 INKYSQDEDNNYSDDHNNGESNNSCYRQRGNFFCYHDLLGNR 179
++ Y + N SD+ ES+ S R N LLGNR
Sbjct: 184 LDNYRKGSQTNLSDETEGSESSVSFNRLSRNHSPTRPLLGNR 225
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1283
Score = 25.4 bits (53), Expect = 6.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 199 DNRRSSHVDGSSYCW 243
DN+ +S D S YCW
Sbjct: 1266 DNQGNSQTDASDYCW 1280
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -2
Query: 456 SASAG-GRLMPVASMLCAILTPSFSF 382
S SAG G P+A L A+ P FSF
Sbjct: 361 SVSAGVGLFSPLAQKLSAVQNPEFSF 386
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,124
Number of Sequences: 5004
Number of extensions: 45756
Number of successful extensions: 172
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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