Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23e23
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    27   2.8  
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    27   2.8  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   2.8  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    26   3.7  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    26   3.7  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   8.5  
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    25   8.5  

>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 255 KFIEHDKDKCYLRKETFLNYKNGD 326
           + ++H + K  LRK  FLNYKN D
Sbjct: 2   RILKHHEQKL-LRKVDFLNYKNDD 24


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +3

Query: 216 NFIEISNRCCDGWKFIEHDKDKCYLRKETFLNY 314
           +F+++  +    W FI + +  CY++ +T L++
Sbjct: 114 DFLQVQEKGVLAWHFIPNQEYNCYVKNKTELSF 146


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
 Frame = +3

Query: 258 FIEHDKDKCYLRKETFLNYKNGDYERLLKADYVIFYKESYC--VPSFSFNVWNSAGMLLS 431
           +I H  D   L + +FLN+ N   +R+  +     +K  +   +P  S   +   G LL 
Sbjct: 254 YINHSSDGASLPQSSFLNF-NSSGKRVSVSAAAQQHKNLFLPYLPQASLPKFIGTGKLL- 311

Query: 432 LDDIRTMSLISINKKDFYSVVTQQEHPIF 518
              + T+ +   N+ D Y +    + PIF
Sbjct: 312 ---VGTLHINRKNRSDAYVITDVLDEPIF 337


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
 Frame = +3

Query: 348 DYVIFYKESYCVPSFSFNVWNSA-----GMLLSLDDIRTMSLISINKKDFYSVVTQQEHP 512
           D  I  + + C+ +   +V NSA     GM+L+L  I  +S   I KK FY     +  P
Sbjct: 524 DQSIDEQAARCLMNGQADVLNSAFHLSYGMILNLMRIEEISPEDILKKSFYQFQNMESLP 583

Query: 513 IFQKTVL 533
           + ++ ++
Sbjct: 584 LIKEELM 590


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 262 LNTIKINAIYVKKHF*IIKTVIMNVY*KLIM*YFTRRV 375
           LN +KINA  ++K + II T  +    +++  +F RRV
Sbjct: 735 LNPMKINAAELEKRYSIIDTEKVTELHQILKPFFLRRV 772


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 3/107 (2%)
 Frame = +3

Query: 219  FIEISNRCCDGWKFIEHDKDKCYLRK-ETFLNYK--NGDYERLLKADYVIFYKESYCVPS 389
            + EI+ R C+    +EH + +  L+K  TF N +  N      LK +Y       Y  P 
Sbjct: 877  YSEITKRTCE--HLLEHKQFESTLKKVATFRNAEGINDSGSFTLKDEYF-----DYVDP- 928

Query: 390  FSFNVWNSAGMLLSLDDIRTMSLISINKKDFYSVVTQQEHPIFQKTV 530
              FN+  S       ++I        + K   SVV ++ HPI    +
Sbjct: 929  --FNIHYSRNQREEAENILRRRYSKQHSKHLESVVYEEYHPILHSNI 973


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -1

Query: 363 KILHNQLSINVHNHRFYNSKMFLYVNSIYLYRVQ*ISNHHNIY 235
           K L   L  N H  +FYN  +   +N + +     +SN + I+
Sbjct: 197 KYLLRMLVYNAHKQKFYNETLPTLLNHMQVLNEYRVSNLNEIW 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,409,163
Number of Sequences: 5004
Number of extensions: 49338
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)