Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23e23
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   5.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   7.0  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    21   9.3  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      21   9.3  
AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.        21   9.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.3  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +2

Query: 11  TNNKQKHNLKFQIFRYQNKSCVLSVRIDVKFVVQRPFFL 127
           TN+  +  L+F + + +  S  L + +    V   PFF+
Sbjct: 352 TNSPHQKKLRFHLAKERKASTTLGIIMSAFIVCWLPFFV 390


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 381 HNNSPCKILHNQLSINVHNHRFYNSKMFLYVNSIYLYRV 265
           HNN+     +   + N +N+  YN+   LY N I + ++
Sbjct: 324 HNNNNYNNNNYNNNYNNYNNNNYNNYKKLYYNIINIEQI 362


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -1

Query: 381 HNNSPCKILHNQLSINVHNHR--FYNSKMFLYVNSIYLYRV 265
           HNN+  K  +N  + N +N+   + N+   LY N I + ++
Sbjct: 324 HNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIINIEQI 364


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 195 DFIEAAKNFIEISNRCCDGWKFIEH 269
           D +   +  I++  RC  G KFI++
Sbjct: 46  DLVPEPRYIIDVPPRCPPGSKFIKN 70


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 195 DFIEAAKNFIEISNRCCDGWKFIEH 269
           D +   +  I++  RC  G KFI++
Sbjct: 46  DLVPEPRYIIDVPPRCPPGSKFIKN 70


>AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.
          Length = 62

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -3

Query: 469 FMLIKDIVLISSN 431
           ++L KD+V++SSN
Sbjct: 43  YLLPKDVVVVSSN 55


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 354 HNQLSINVHNHRFYNSK 304
           +NQL+ N +  RF+ SK
Sbjct: 542 YNQLNYNENIERFFKSK 558


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,611
Number of Sequences: 438
Number of extensions: 3381
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)