Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23e22
         (592 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0064 + 444888-444959,445073-445277,445736-445901,446029-44...    31   0.52 
02_03_0286 + 17317316-17317516,17317610-17318245                       30   1.2  
09_01_0173 + 2495864-2496312,2497420-2497457,2497915-2498123,249...    29   2.1  
04_04_0692 - 27307349-27307728,27308381-27308546                       29   2.8  
02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459     29   2.8  
04_01_0356 + 4663723-4664253                                           29   3.7  
03_06_0230 - 32518749-32519143,32519301-32519589                       29   3.7  
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498...    28   6.4  

>08_01_0064 +
           444888-444959,445073-445277,445736-445901,446029-446251,
           446982-447058,447370-447557,447845-447942,448202-448335,
           448421-448555,448832-448960,449263-449632,449897-450018,
           450155-450274,450396-450626,450706-450894,450978-451089,
           451193-451438
          Length = 938

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 177 RESMTAVYRIYEEFCNETTLHGLKHTVEKSLHWFE 73
           ++  +  Y+ Y EFC  + +  L+H  EK +H+ E
Sbjct: 842 QDENSGAYKHYSEFCQGSVMDPLEHDPEKEMHYAE 876


>02_03_0286 + 17317316-17317516,17317610-17318245
          Length = 278

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 449 CSRDTASVASCRDARASALAPCSDGRWI--SIVNENRI 342
           C R T    +C    A AL+PC+  RW+  SI N  R+
Sbjct: 3   CKRPTPDGDACSATAAVALSPCNKPRWLFMSIFNYKRM 40


>09_01_0173 +
           2495864-2496312,2497420-2497457,2497915-2498123,
           2498894-2499205
          Length = 335

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -1

Query: 547 EKLQKFQMTFPVSNVKQLFRAPFSVSLSKVAQTAVGTPPLWLPAATPVLRLWHL 386
           EK + F     ++ +K +F +    + S VA+T  G PPL +P  T     W L
Sbjct: 253 EKFELFGQNIDLTPLKGIFSS-IENAASSVARTISGQPPLKIPIRTDNAESWLL 305


>04_04_0692 - 27307349-27307728,27308381-27308546
          Length = 181

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +3

Query: 264 NTGE*CSNAKRRKTIGELHGNL--GLDLDPILVHDRDPTTITTRCQSRSTGVAAGS 425
           +TG   +  K   T+  L G+   G  L      D DPTT TT   S +TG A GS
Sbjct: 107 STGHCGAGMKLTVTVATLSGSAAGGTRLAKPSSSDADPTTTTTTRTSSATGGATGS 162


>02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459
          Length = 867

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 300 KTIGELHGNLGLDLDPILVHDRDPTTITTRCQSRSTGVAAGSHRGGVPTAV 452
           + IG LH  + LDLD   ++   PTTI      +S  ++     G +P ++
Sbjct: 225 REIGMLHSLVALDLDHNNINGSIPTTIGNLTSLKSLDLSTNEITGFIPESI 275


>04_01_0356 + 4663723-4664253
          Length = 176

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 53  QYYYFYLSNQCKLFSTVCLRPCKVVSLQNSSYILYTAVM 169
           +YY FY  N     S+VC+    +V L  + Y+ +T+VM
Sbjct: 67  RYYVFYYCNATSFASSVCI----IVLLATNFYLSHTSVM 101


>03_06_0230 - 32518749-32519143,32519301-32519589
          Length = 227

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = -3

Query: 542 ITKISNDVSSLKCQTTL-----SRAIFCFTLQSCTDCSRDTASVASCRDARASALAPCSD 378
           + +++ DVS+ +    L     SRA     + S + C+R  A VA+ R AR++A A    
Sbjct: 7   VARLARDVSAARDAARLAAAAASRAARSSAVASSSPCARSAAVVAARRAARSAAAAASRA 66

Query: 377 GRWIS 363
            R +S
Sbjct: 67  ARAVS 71


>04_04_0468 - 25447774-25447945,25449016-25449130,25449541-25449877,
            25450299-25450628,25451090-25451362,25451471-25451929,
            25452307-25452516,25452617-25452828,25453304-25453404,
            25453584-25454008,25454167-25454360,25454436-25454701,
            25454809-25455015,25455121-25455281,25455741-25455933,
            25456158-25456251,25457238-25457373,25458074-25458202,
            25458315-25458449,25458549-25458613,25459875-25459950,
            25460775-25460885,25461194-25461371,25462340-25462434
          Length = 1557

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 161  LCTEYTRNSAMKRPYTASNILSRRACIGLRGKNNNIE 51
            +CT   RNS   R + A   LS+    G + +N ++E
Sbjct: 1326 ICTAANRNSKAARKFAAQETLSKLKNYGYKHRNKSLE 1362


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,675,781
Number of Sequences: 37544
Number of extensions: 319874
Number of successful extensions: 1098
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)