Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23e21
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   6.6  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   6.6  
SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa...    24   8.7  
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    24   8.7  

>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 167  SSGLHQLCMASRANIMYRVRTQQDALQAVPLIVTLAST 280
            S  L + CM       YRV+ QQ   +  P  V L+S+
Sbjct: 1253 SKRLVKACMTILGKFHYRVQIQQFVFELFPYSVLLSSS 1290


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -2

Query: 119 VAPPNTAAPTSCTIGKVAEYSHHPTRVPKYKSKF 18
           V PP T A T+  +    E S HP     Y + F
Sbjct: 145 VVPPTTHANTTSFVPTTTESSIHPITTGFYNTTF 178


>SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease
           Pnu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 113 PPNTAAPTSCTIGKVAEYSHHPTRVP 36
           PPN A PT      +AE S  PT  P
Sbjct: 223 PPNVAVPTHFFKVIIAEKSGEPTSSP 248


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 161 KKSSGLHQLCMASRANIMYRV 223
           KK   LH++C+ +R N   R+
Sbjct: 239 KKKDHLHRMCLVNRGNAPVRI 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,476,181
Number of Sequences: 5004
Number of extensions: 24520
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)