Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23e21
         (432 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0029 - 16610182-16611753                                         33   0.13 
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879...    30   0.92 
01_07_0085 + 40986662-40986971,40988696-40988918,40989173-40989491     27   8.6  

>03_04_0029 - 16610182-16611753
          Length = 523

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 146 DAGSLIMSRVAPPNTAAPTSCTIGKVAEYSHHPTRVPKYKSK 21
           D GS++   ++PP+TAAP + +    +  +  P+ VP   SK
Sbjct: 57  DIGSVVAQTLSPPSTAAPAAASPSIASPAASSPSDVPSSSSK 98


>02_01_0014 -
           87215-87280,87358-87495,87593-87721,87801-87869,
           87962-88042,88133-88237,88338-88568,88665-90197,
           90660-90752,91477-92887,93184-93305,93479-93718,
           94521-94682,94770-94937,95025-95141,95266-95376,
           95919-96506
          Length = 1787

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
 Frame = +2

Query: 167 SSGLHQLCMASRANIMYRVRTQQD--ALQAVPLIVTLASTYITYTL*YKYMNATLVGDAF 340
           S+G+ ++ +++ ANI  ++ +      ++AVPL+  L + + +  L +  +  T V +AF
Sbjct: 229 STGVQRVALSTAANICRKLPSDASEFVMEAVPLLTNLLNHHDSKVLEHASVCLTRVAEAF 288

Query: 341 AS 346
           AS
Sbjct: 289 AS 290


>01_07_0085 + 40986662-40986971,40988696-40988918,40989173-40989491
          Length = 283

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -2

Query: 194 PYKVDASRNSFYVGFRDAGSLIMSRVAPPNTAAPTSCTIGKVAEYSHHPTRVPKYKSKFD 15
           P   D S  +F  G +D G +++ R+A     A  + T+   A        V  YK +F 
Sbjct: 172 PVPQDFSIEAFG-GPKDVGEVVLRRIAKTKRGADINATLLDAALREDPANNVKYYKLEFR 230

Query: 14  VE 9
           VE
Sbjct: 231 VE 232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,374,327
Number of Sequences: 37544
Number of extensions: 153956
Number of successful extensions: 267
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)