Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23e19
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    25   7.0  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   9.3  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    25   9.3  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   9.3  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    25   9.3  

>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = -3

Query: 416 NLYSRNNVIIKYSSGLGRTFGEGEEAGS---SGRLASAFDDGSEPI 288
           N  S+  V    +SGLG+T G G +        R+   F+ G  PI
Sbjct: 10  NYQSKKRVGRGPASGLGKTSGRGHKGSGQRRGRRIKPGFEGGQTPI 55


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 328 PDEPASSPSPNVLPRPLE 381
           P +P+ S  P+V+PRP E
Sbjct: 517 PPQPSISRRPSVIPRPQE 534


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 292 GSLPSSKALARRPDEPASSPSPN 360
           G+ P+S  L  R +E  S PSPN
Sbjct: 431 GAFPNSNTLPPRYNELGSLPSPN 453


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 289 IGSLPSSKALARRPDEPASSPSPNVLPRP 375
           +GSL  S++ + R   P  SPSP+ L  P
Sbjct: 341 LGSLHRSRSPSPRSGRPRRSPSPSHLSIP 369


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 181 YTSHSIDYVNICTDS 137
           Y SHS+  VN C DS
Sbjct: 226 YHSHSVKQVNFCNDS 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,049,984
Number of Sequences: 5004
Number of extensions: 38834
Number of successful extensions: 86
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)