Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23e19
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0356 + 17915029-17916236,17932970-17933283,17933936-179342...    28   5.4  
03_01_0490 + 3711009-3711383,3712104-3712202,3713209-3713461,371...    27   7.1  
01_06_1075 + 34350155-34350709                                         27   7.1  

>12_02_0356 +
           17915029-17916236,17932970-17933283,17933936-17934244,
           17934613-17935439
          Length = 885

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 425 AVKNLYSRNNVIIKYSSGLGRTFGEGEEA 339
           +V ++Y R NVI+    GLG T+ + E+A
Sbjct: 102 SVNDMYGRLNVIVNDLKGLGATYTDLEDA 130


>03_01_0490 +
           3711009-3711383,3712104-3712202,3713209-3713461,
           3713908-3714090,3714091-3714227,3714511-3714710,
           3714797-3714994,3715109-3715271
          Length = 535

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 380 SSGLGRTFGEGEEAGSSGRLASAF 309
           S G+G   GE EEA + GR A+AF
Sbjct: 88  SGGVGGGDGEDEEAATGGREAAAF 111


>01_06_1075 + 34350155-34350709
          Length = 184

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = -3

Query: 422 VKNLYSRNNVIIKYSSGLGRTFGEGEEAGSSGRLASAFDDGSEP 291
           V+ L  RN    KYS        +G   G  G LA+A D   EP
Sbjct: 61  VQELTGRNADPSKYSPRASADDDDGGGGGGGGELAAASDGAGEP 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,459,203
Number of Sequences: 37544
Number of extensions: 230803
Number of successful extensions: 731
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)