Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23e18
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   3.0  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    25   5.2  
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51...    25   5.2  
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos...    25   5.2  
SPBC16A3.16 |||mitochondrial inner membrane protein involved in ...    25   9.0  

>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 384 FAYSQKTFELFCKRSTFSI 328
           F +SQKTF +FC  S+F I
Sbjct: 249 FQFSQKTFIIFCFLSSFII 267


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 110 FSNLK*NIYNFN*LISWTLFLHSSVHRSRILRV 208
           F+NL  NI +F  L +++L L +  H S IL V
Sbjct: 399 FNNLCSNILHFRALSAYSLNLTADHHHSEILHV 431


>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
           L51-b|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 225

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 301 KKCKGYIDDYGECRTLTKQLKRFLAIRKERQRQIACGKLTDDR 429
           KKC+ +  D+G  R L     R ++I+K    +  C  ++ DR
Sbjct: 41  KKCQRFRGDWGAKRKLPILKNRHISIQKFDTFEHQCAFISSDR 83


>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
           Ups1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 334 ECRTLTKQLKRFLAIRKERQRQIACGKLTDDR 429
           E  T TKQ K  L +  E+ R I   KL DDR
Sbjct: 126 EWYTTTKQHKPLLFLVGEKHRDIIQRKLGDDR 157


>SPBC16A3.16 |||mitochondrial inner membrane protein involved in
           cytochrome c oxidase assembly Pet191
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 85

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 301 KKCKGYIDDYGEC-RTLTKQLKRF 369
           ++CK  I+ YGEC R +    KR+
Sbjct: 41  EECKNLIEAYGECKRQMLDMTKRY 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,076,924
Number of Sequences: 5004
Number of extensions: 41244
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)