Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23e12
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    28   1.0  
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    27   1.8  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   3.2  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   3.2  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    27   3.2  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   5.5  
SPAC11D3.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.3  

>SPCC550.03c |||RNA helicase involved in mRNA
            catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +1

Query: 220  LRNQLAEDGCAESQVVLAKQLLEEKCELEADKISNFKQALEWLICATEQAH 372
            L N LA+  C E+  +L+  + +EK E+E     + ++  E ++   E+ +
Sbjct: 1062 LENSLADFSCEETIALLSAFVFDEKTEVEPTISPHLQKGKEMILSVAEKVN 1112


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 463 AASRQETVARKA--ARDLFASLSNGEQYITTVQLERRIRE 576
           AA+ Q+ + + A   +D  A L  GEQY   VQL++ + E
Sbjct: 417 AANLQKELPKDANKLKDFKAKLGEGEQYPELVQLQKEVAE 456


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1334

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = -3

Query: 527  FDKLANRSLAAFLATVSCLLAARQDLARTIAALSSSMTPLRIHLLKSLLASGC 369
            F+ + N S    + ++   L   QD  R +  L        +H LK+ L  GC
Sbjct: 1117 FEPVTNYSKTRNMPSLKKFLTVNQDPLRIVKELYIPTESTSVHFLKNKLCVGC 1169


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 610  RPLSSVTSYCKSLLSDVRVEPLLCIVHHSTNWQ 512
            + L+S+  +   L+SD+ V+P L +   S N Q
Sbjct: 1565 KALNSMQEFTSQLISDINVDPALFVQSTSVNTQ 1597


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 484 VARKAARDLFASLSNGEQY 540
           V RK+ RDL  SLSNG  Y
Sbjct: 708 VERKSIRDLIQSLSNGRLY 726


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 502 RDLFASLSNGEQ-YITTVQLERRIREICN 585
           +D+   L+  E  Y TT++LE+R +EI N
Sbjct: 458 KDIAIRLNTAEYIYRTTIELEKRFQEISN 486


>SPAC11D3.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 181 VCVPRALPFNSFIKHKNMKGFQYILY 104
           +CV  A+ FN FI HK+   F YI Y
Sbjct: 34  LCV-LAISFNRFILHKSPDIFTYIQY 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,635
Number of Sequences: 5004
Number of extensions: 52666
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)