Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23e12
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1133 - 10550799-10551137,10552195-10552254,10555693-105574...    29   3.3  
03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376     29   4.3  
07_03_1759 + 29285262-29287208                                         28   5.7  
05_07_0005 + 26997352-26998674                                         28   5.7  
12_01_0500 + 3966456-3968556,3968640-3969087,3969524-3969718,396...    28   7.6  
05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635     28   7.6  

>07_01_1133 -
           10550799-10551137,10552195-10552254,10555693-10557401,
           10557534-10557616,10577533-10578074
          Length = 910

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 424 EDSAAIVRAKSCLAASRQETVARKAARDL 510
           E+   I++ +SC+A SRQ++ A    RDL
Sbjct: 651 EEKVKIIQERSCIAQSRQKSYADNRHRDL 679


>03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376
          Length = 798

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -3

Query: 527 FDKLANRSLAAFLATVSCLLAARQDLARTIAALSSSMTPLRIHLLKSLL 381
           F ++ +R LA++ A +S L   RQ L    AAL+S   P  +    SLL
Sbjct: 71  FRRMPSRDLASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLL 119


>07_03_1759 + 29285262-29287208
          Length = 648

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
 Frame = +1

Query: 244 GCAESQVVLAKQLLEEKCELEADKISNFKQALEW------LICATEQAHPEARRLLRRC- 402
           GC  S++  A  LL  K  L  D+ ++F + LE       L    +QA   A  L R   
Sbjct: 466 GCTRSELERAHLLLTLK--LRPDRCASFAERLELVDEHRDLEAVRDQARMSALSLYRMLQ 523

Query: 403 -----IRSGVIDEDSAAIVRAKSCLAASRQETVARKAA 501
                I S V DE++A   RAK   AA+     A  AA
Sbjct: 524 KGYSFIMSVVQDEEAAERQRAKDAAAATAAAAAAAAAA 561


>05_07_0005 + 26997352-26998674
          Length = 440

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 193 HGPQG-SLRRLRNQLAEDGCAESQVVLAKQLLEEKCELEAD 312
           H PQ  + R L   L EDG AE    + +Q+   +  L+AD
Sbjct: 370 HCPQARTFRHLARGLGEDGKAEEAFFVLEQMARREMSLDAD 410


>12_01_0500 +
           3966456-3968556,3968640-3969087,3969524-3969718,
           3969891-3970119
          Length = 990

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = +1

Query: 355 ATEQAHPEARRLLRRCIRSGVIDEDSAAIVRAKSCLAASRQETVARKAARDLFASLSNG 531
           ATE+ +P A + L    ++ +++E ++A+ +  S       E+ A K ARD   + SNG
Sbjct: 387 ATEKINPAAEQELLPSGQAELLNETASAVAQNGS-FPTQASESSAEKKARDRNKNKSNG 444


>05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635
          Length = 819

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = -3

Query: 521 KLANRSLAAFLATVSCLLAARQDLARTIAALSSSMTPLRIHLLKS---LLASGCACSVAH 351
           +L  R L A +     LL +     R+ +A  SS+ P  +HLL S   LL+S  +   AH
Sbjct: 86  RLLRRHLRAEVLRRHPLLLSHLLSLRSASASLSSL-PSHLHLLSSHLSLLSSHLSAPRAH 144

Query: 350 MSHSKACL 327
           ++HS + L
Sbjct: 145 LAHSSSSL 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,521,869
Number of Sequences: 37544
Number of extensions: 345442
Number of successful extensions: 811
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)