Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23e10
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|... 27 2.2
SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.9
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 3.8
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual 26 3.8
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 26 3.8
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 5.0
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 25 6.6
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 25 6.6
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 25 8.8
>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 402
Score = 27.1 bits (57), Expect = 2.2
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +2
Query: 89 NQNIKAAQNKFCDKQMSAGDVGTFSNG---SNIRKFTKNQGPGRPRKTGKIQSSREKDNI 259
N+ K +N+ + S+ DV SN + K TK + + Q+ +++DN+
Sbjct: 228 NREEKYFENQLHLVKASSSDVSNSSNSFPENRYPKLTKVEKQMTKSVSKTSQTDKDEDNL 287
Query: 260 KLSRSDIQRIKNM 298
+++ + RIKN+
Sbjct: 288 DFTKNLLTRIKNL 300
>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 120
Score = 26.6 bits (56), Expect = 2.9
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -3
Query: 232 YFSCFSWSS-WPLIFCEFSYIRAI*KCSHIACTHLFVTKLILCRFNILISHFN 77
+ SC ++ S W L F ++R + S + C L + K I F+I I H +
Sbjct: 17 FLSCCAFMSHWKLKDFSFRFLRMCGERSLVVCYPLKLLKQIRSLFSIAIGHLS 69
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 387 LSLKSITKK--LQKHHVEESNQTRVLISVLNVMKNLLFTASKISIFSPL 527
+ + +IT K LQK ESN +R+L++ + K L + ++ PL
Sbjct: 1155 VGIAAITTKSLLQKDFAAESNPSRLLLAARQMAKTLAGNLAMVTCREPL 1203
>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
Length = 231
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 204 QEDQEKQEKYKALVKKITLNCHDLIY 281
QEDQ+K+EK L ++IT+ +I+
Sbjct: 13 QEDQDKREKIIRLSREITIQSKRMIF 38
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 206 GRPRKTGKIQSSREKDNIKLSRSDIQRIKNMLNESRPVMLTLMDPNRTN 352
G+ T K QS EKD K++ + + +K + L L+D N N
Sbjct: 24 GKRFVTEKSQSQEEKDTSKITENAKEEVKRDTSSLAKESLKLLDLNGLN 72
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 151 HIACTHLFVTKLILCRFNILISHFNCVSQKCLDN 50
+IA L ++ L LC ++++ + QKC+DN
Sbjct: 537 NIAIPWLRLSGLALCHDPVIVTKLCRIGQKCVDN 570
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.4 bits (53), Expect = 6.6
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 387 LSLKSITKKLQKHHVEESN-QTRVLISVLNVMKNLLFTASKISIFSPL 527
L+LK + K LQK ++ESN Q LIS + + K + T + L
Sbjct: 803 LTLKELPKDLQKQILKESNLQKSDLISEVKLEKPHIVTFQHVQSLEDL 850
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 25.4 bits (53), Expect = 6.6
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Frame = -3
Query: 226 SCFSWSSWPLIFCEFSYIRAI*KCSHIACTHLF-----VTKLILCRFN--ILISHFNCVS 68
S F++ W +I C+ Y A+ H A +F + FN + + FN ++
Sbjct: 1008 SLFTFDMWKMIICQSMYQLAVTLVLHFAGNSIFHYPSNTADMNTIVFNTFVWLQLFNEIN 1067
Query: 67 QKCLDNYKNFAFHKI 23
+ LDN N F +I
Sbjct: 1068 NRRLDNKLNI-FERI 1081
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +2
Query: 248 KDNIKLSRSDIQRIKNMLNESRPVMLTLMDPNRTNLYPQHIYP 376
K + +S +++ R +N+S ++ + P R+ + IYP
Sbjct: 323 KRGVNVSENEVMRAYKSVNDSIIEPISFIVPRRSESFQSDIYP 365
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,442,329
Number of Sequences: 5004
Number of extensions: 49103
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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