Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23e07
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    29   0.48 
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    29   0.48 
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    27   1.9  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    27   2.5  

>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 263 PRYRAIAVYILQQGDFMGALSRDAANNSPSKRSASQNL 376
           P+++   V ILQQ  ++ A++ D  N++PS + A   +
Sbjct: 698 PQHKYAVVDILQQRGYLVAMTGDGVNDAPSLKKADAGI 735


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 263 PRYRAIAVYILQQGDFMGALSRDAANNSPSKRSASQNL 376
           P+++   V ILQQ  ++ A++ D  N++PS + A   +
Sbjct: 610 PQHKYAVVDILQQRGYLVAMTGDGVNDAPSLKKADTGI 647


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +2

Query: 311 MGALSRDAANNSPSKR--SASQNLPPTMRPTK 400
           +GALS ++  +SPSK   S S  +  T++PTK
Sbjct: 215 LGALSSNSVKSSPSKSFVSISSPVQSTVKPTK 246


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 297 NKVTSWGLYPGTLLTIALAREVLRRIYHRPCDLLKICGEKLSA 425
           N+V  W +    L+  +  R V   I H P +  K+C E+L++
Sbjct: 459 NEVVLWHIPNKVLINASRKRSV---ILHLPTETFKVCSERLTS 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,711
Number of Sequences: 5004
Number of extensions: 43817
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)