Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23e06
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.3  
SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces pom...    26   4.0  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    26   5.2  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    25   9.1  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 41  PIKDCVVGQEYWIDVTHV--NNPHSFFVRLIDFRMDIDIL 154
           P   C   +E  +   H+   N  S FV+ +DF +D++IL
Sbjct: 318 PFDMCFARKELLVATRHILSTNLKSLFVKKLDFLLDLNIL 357


>SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 524 DLINSCPDDIATMLAYTNY 580
           DL+N  P+D   +LA+ NY
Sbjct: 432 DLLNGIPEDTPNVLAFNNY 450


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = +2

Query: 332 TSKIYK--PKTPSKMVPLAIHCKLANCVPLNTD-IWEAKTTEAMLTYIGKERTKMIVKNK 502
           TSK+ K   + P+ + P+AIH  L     LN D +   K  E +L    ++    +    
Sbjct: 343 TSKLEKVSKQNPTLVYPIAIHL-LGERGSLNFDRVTNTKLVEHILPLADEQGILQLF--- 398

Query: 503 MYNQLSVDLINSCPDDIAT 559
              QL +  +  CP+DIA+
Sbjct: 399 ---QLLLSYVKRCPEDIAS 414


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 44  IKDCVVGQEYWIDVTHVNNPHSFFVR 121
           +K C+V  +   DVT V +P  FFV+
Sbjct: 39  LKMCIVLPDTGYDVTQVCDPWQFFVK 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,704,063
Number of Sequences: 5004
Number of extensions: 57326
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)