Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23e06
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1480 - 37660591-37660720,37660899-37660930,37661061-376611... 31 0.58
01_05_0555 - 23231327-23231547,23232103-23232232,23233260-23233724 30 1.8
09_04_0694 - 19529084-19529201,19529464-19529544,19529637-195301... 29 2.3
05_03_0237 + 10765061-10765507,10766438-10766567,10768485-10768705 29 3.1
02_04_0432 + 22885880-22886168,22886755-22886801,22888496-22888939 28 5.4
11_06_0027 + 19363678-19363698,19364442-19364484,19366240-193662... 28 7.1
11_03_0151 - 10816905-10816977,10817090-10817421,10817884-108179... 28 7.1
11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152... 27 9.4
08_01_0651 + 5622786-5624165,5624720-5624881,5624984-5625173,562... 27 9.4
07_01_0167 + 1175694-1176015,1176129-1176803,1177064-1177107 27 9.4
03_02_0277 + 7056341-7056391,7056681-7056764,7057107-7057223,705... 27 9.4
>01_06_1480 -
37660591-37660720,37660899-37660930,37661061-37661155,
37661460-37661527,37661608-37661694,37662884-37662912,
37663019-37663138,37663854-37663905,37663986-37664050,
37664174-37664536,37664637-37664711,37664803-37664940,
37665025-37665181,37665471-37665478,37665576-37665710,
37665965-37666082,37666791-37666915,37667571-37667717,
37668297-37668380,37668671-37668800,37669196-37669347,
37669678-37669857,37670660-37670731,37671104-37671295,
37671366-37671411,37671498-37671647,37671725-37671882,
37671995-37672101,37672191-37672407,37672484-37672696,
37672852-37672972,37673072-37673253,37673475-37673672,
37674770-37674967
Length = 1447
Score = 31.5 bits (68), Expect = 0.58
Identities = 25/116 (21%), Positives = 50/116 (43%)
Frame = +2
Query: 278 MKCDLKAIDYGCTDIGVPTSKIYKPKTPSKMVPLAIHCKLANCVPLNTDIWEAKTTEAML 457
++C + +D GC D+ + +I+ + L+ + T I K T+ +L
Sbjct: 166 LRCSVIMLDVGCQDLVLDMVRIFFSAVKQGLQQSVCQAMLS----IMTQILNEKVTQPLL 221
Query: 458 TYIGKERTKMIVKNKMYNQLSVDLINSCPDDIATMLAYTNYSSLSFGNEISISRLR 625
I + K ++L+VD+I +C + + +L T SS F ++ + R
Sbjct: 222 DVILRNLVK--EDKGASHKLAVDIIQNCAEKLEPVLR-TFLSSCIFNKDVPANETR 274
>01_05_0555 - 23231327-23231547,23232103-23232232,23233260-23233724
Length = 271
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Frame = +2
Query: 365 KMVPLAIHCKLANCVPLNTDIWEAKTTEAM-----LTYIGKERTKMIVKNKMYNQLSVDL 529
+++P +H PLN A ++ + L +IG++ + + K +N + +
Sbjct: 150 RVLPRKVHLHAGTDEPLNVTFMRAPSSALLKIDVPLMFIGEDASPGLRKGAYFNTIKRTV 209
Query: 530 INSCPDDIATMLAYTNYSSLSFGNEISISRLR 625
CP DI + S L G ++ + L+
Sbjct: 210 KYLCPADIVPPYIEVDLSELDVGQKLLMRDLK 241
>09_04_0694 -
19529084-19529201,19529464-19529544,19529637-19530136,
19530444-19530540,19530633-19530775,19531187-19531528,
19531810-19532031,19532292-19532330,19532386-19532601,
19533101-19533196,19533416-19533481,19533777-19533821,
19533903-19533965,19534274-19534344,19534599-19534699,
19534896-19534972,19535856-19535900
Length = 773
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/63 (23%), Positives = 34/63 (53%)
Frame = +2
Query: 23 DYVSSVPIKDCVVGQEYWIDVTHVNNPHSFFVRLIDFRMDIDILEECGKAVEDSEVTIGR 202
DYV + + D +V Q+ W +V+ NN + ++ D+++ G+ +S +T+G+
Sbjct: 546 DYVRKLNMDDSLVAQQMWENVSS-NNKKGVYSLIVGSNADVNL--TYGQTSFNSALTLGK 602
Query: 203 VVI 211
++
Sbjct: 603 ALL 605
>05_03_0237 + 10765061-10765507,10766438-10766567,10768485-10768705
Length = 265
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Frame = +2
Query: 365 KMVPLAIHCKLANCVPLNTDIWEAKTTEAM-----LTYIGKERTKMIVKNKMYNQLSVDL 529
+++P +H PLN A ++ + L +IG + + + K +N + +
Sbjct: 144 RVLPRKVHLHAGTDEPLNVTFMRAPSSALLKIDVPLMFIGDDASPGLRKGAYFNTIKRTV 203
Query: 530 INSCPDDIATMLAYTNYSSLSFGNEISISRLR 625
CP DI + S L G ++ + L+
Sbjct: 204 KYLCPADIVPPYIEVDLSELDVGQKLLMRDLK 235
>02_04_0432 + 22885880-22886168,22886755-22886801,22888496-22888939
Length = 259
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 168 FPHSS-RISMSILKSIKRTKKLCGLFT*VTSIQYSC 64
+P S R S++K + +++LCG F+ +T + + C
Sbjct: 74 YPRSPLRDITSVVKVMNHSRRLCGKFSEITGLNFEC 109
>11_06_0027 +
19363678-19363698,19364442-19364484,19366240-19366276,
19366359-19366602,19366749-19366765,19366901-19366986,
19367347-19367378,19367455-19367615,19367722-19367818,
19367894-19368085,19368172-19368233,19368302-19368448,
19368776-19369589
Length = 650
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +2
Query: 122 LIDFRMDIDILEECGKAVEDSEV-TIGRVVIYLSGTLRKHVRGLVYFIHWHNVMKCDLKA 298
LI+F ++DI V D + + ++++ G + H R V W+ V D+K
Sbjct: 254 LINFPTELDISPYMSGVVTDKHIYELFGIIVHEGGVIGGHYRSYVKTNCWYEVSDRDVKR 313
Query: 299 ID 304
++
Sbjct: 314 VN 315
>11_03_0151 -
10816905-10816977,10817090-10817421,10817884-10817967,
10818045-10818092,10818233-10818287,10818378-10818433,
10818543-10818627,10819810-10819844
Length = 255
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 179 DSEVTIGRVVIYLSGTLRKHVRGLVYFIHWHNVMKCDLKAIDYGCTDIGVPTSKI 343
D +T R I+ TLR+ ++ +F+ +K +K +D GC IG P +I
Sbjct: 2 DGVITFIRTRIWHGETLRESLKRREHFLALQLGLKKGMKVLDVGC-GIGGPLREI 55
>11_06_0645 -
25814302-25814759,25814853-25815005,25815032-25815214,
25815342-25815531,25815624-25815784,25816136-25816623,
25817035-25817075
Length = 557
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 496 LDNHFCSFFANISQHSFSCFSLPNIG 419
+DN F++ QHSF C + P +G
Sbjct: 381 MDNSTLEVFSSQQQHSFKCNNTPELG 406
>08_01_0651 +
5622786-5624165,5624720-5624881,5624984-5625173,
5625253-5625284
Length = 587
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 157 FKNIYVHSKVDQANKKTMRIIYVSDIYPVFLSY 59
FKN+ V + +A K+ R+I + D Y +F+ +
Sbjct: 199 FKNVDVEKWISEAIKRKARVIQLEDHYGMFVVF 231
>07_01_0167 + 1175694-1176015,1176129-1176803,1177064-1177107
Length = 346
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Frame = +2
Query: 245 GLVYFIHWH--NVMKCDLKAID 304
G VYF+ WH N+++ DL+ +D
Sbjct: 185 GAVYFLTWHGRNILRYDLRKLD 206
>03_02_0277 +
7056341-7056391,7056681-7056764,7057107-7057223,
7057335-7057772,7057889-7058295,7058371-7058470,
7058707-7058793,7059056-7059544
Length = 590
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/84 (23%), Positives = 36/84 (42%)
Frame = +2
Query: 374 PLAIHCKLANCVPLNTDIWEAKTTEAMLTYIGKERTKMIVKNKMYNQLSVDLINSCPDDI 553
P AIH +C+P T+ + L I E+ + + K ++Q + +SC +I
Sbjct: 71 PCAIHSSNESCIPKPTEELIKEIAVLELEVICLEQHLLALYRKAFDQQICSVSSSCDMEI 130
Query: 554 ATMLAYTNYSSLSFGNEISISRLR 625
A + L+ +E+ S R
Sbjct: 131 NKQSARSFSGILTGSSELDFSTPR 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,021,558
Number of Sequences: 37544
Number of extensions: 310534
Number of successful extensions: 636
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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