Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23e06
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY741200-1|AAU89102.1|  596|Caenorhabditis elegans STE20-like se...    27   8.5  
AL132898-15|CAC14417.2|  596|Caenorhabditis elegans Hypothetical...    27   8.5  

>AY741200-1|AAU89102.1|  596|Caenorhabditis elegans STE20-like
           serine/threonine kinase protein.
          Length = 596

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = +2

Query: 116 VRLIDFRMDIDILEECGKAVEDSEVTIGRV-VIYLSGTLRKHVRGLVYFIHWHNVMKCDL 292
           +RL++    +DIL+   KA+   +   G +  + ++  LR+ ++GL YF H +  +  D+
Sbjct: 183 MRLLNCGSMLDILKRKVKAIGKEQAQFGVLDEVSIATVLREVLKGLEYF-HLNGQIHRDI 241

Query: 293 KA 298
           KA
Sbjct: 242 KA 243


>AL132898-15|CAC14417.2|  596|Caenorhabditis elegans Hypothetical
           protein Y59A8B.23 protein.
          Length = 596

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = +2

Query: 116 VRLIDFRMDIDILEECGKAVEDSEVTIGRV-VIYLSGTLRKHVRGLVYFIHWHNVMKCDL 292
           +RL++    +DIL+   KA+   +   G +  + ++  LR+ ++GL YF H +  +  D+
Sbjct: 183 MRLLNCGSMLDILKRKVKAIGKEQAQFGVLDEVSIATVLREVLKGLEYF-HLNGQIHRDI 241

Query: 293 KA 298
           KA
Sbjct: 242 KA 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,665,452
Number of Sequences: 27780
Number of extensions: 307722
Number of successful extensions: 725
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)