Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23e05
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    29   0.75 
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    28   0.99 
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    28   0.99 
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    28   1.3  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.3  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    27   2.3  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    26   4.0  
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac...    26   5.3  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    26   5.3  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    25   7.0  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   7.0  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    25   7.0  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    25   9.2  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    25   9.2  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    25   9.2  

>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 231 DKKPLVPEKANDVQKNVTKVTKAGSERPKASSKRNDSSNSE-TDSGEMERERPDPLIGSG 407
           DK   + EK +D++    +   + ++   A++K   + ++  T++GE E E     IG G
Sbjct: 326 DKTDAIAEKVSDIRLGDGEKKSSETDSEVAATKTPATEDAPATNAGEAEEEEGWTKIGKG 385

Query: 408 RK 413
           RK
Sbjct: 386 RK 387


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 15/62 (24%), Positives = 32/62 (51%)
 Frame = -2

Query: 596 NVTNSRHIFRHKRLQLEVNVYLLRCVFHNILKDVFHFRRNLQILIQLGIVRAFSWYHDAA 417
           N T+  H   +  L + ++++ L CV    L +V H  +++QI+ +L +     W+ +  
Sbjct: 137 NYTDLNHKLANYGLSI-LSIHALMCVECECLLNVIHTAQHMQIVHKLELNEDLLWFQELR 195

Query: 416 SL 411
           +L
Sbjct: 196 TL 197


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 15/62 (24%), Positives = 32/62 (51%)
 Frame = -2

Query: 596 NVTNSRHIFRHKRLQLEVNVYLLRCVFHNILKDVFHFRRNLQILIQLGIVRAFSWYHDAA 417
           N T+  H   +  L + ++++ L CV    L +V H  +++QI+ +L +     W+ +  
Sbjct: 137 NYTDLNHKLANYGLSI-LSIHALMCVECECLLNVIHTAQHMQIVHKLELNEDLLWFQELR 195

Query: 416 SL 411
           +L
Sbjct: 196 TL 197


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 246 VPEKANDVQKNVTKVTKAGSERPKASSKR-NDSSNSETDS 362
           V  +  D+QKN T+V  + SE+P    +   D  NSE  S
Sbjct: 537 VANEGEDLQKNATEVKASTSEKPVFRFEAVTDEKNSEVSS 576


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = +3

Query: 216 EDKVPDKKPLVPEKANDVQKNVTKVTKAGSERPKASSKRNDSSNSETDSGEMERERPDPL 395
           E+ +P + PL  E   +   N  K +    E    +SK ND+SNS T+  + +   P   
Sbjct: 132 EEPLPGEPPLPNEPVPET--NCHKESPLSDETVSETSK-NDTSNSPTNENQAQ---PSIA 185

Query: 396 IGSGRKRGGVVIPAEGAY 449
              G +   +  P++ AY
Sbjct: 186 WSEGHRIAAIWDPSQQAY 203


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 213 LEDKVPDKKPLVPEKANDVQKNVTKVTKAG-SERPKASSKRNDSSNSETDSGEMERERPD 389
           LE+     + LVPE+   +Q    K  +   SE    +SKR DS+       E+E ++ D
Sbjct: 590 LEELQSRVQKLVPERQTTLQALQQKCLQDDISESLMQNSKRKDSALDTNQLFELELKKFD 649

Query: 390 PL 395
           PL
Sbjct: 650 PL 651


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
 Frame = +3

Query: 228 PDKKPLVPEKANDVQKNVTKVTKAGSERPKASSKRNDSSNSET---DSG--EMERERPD 389
           PD    + ++A    KN+ ++++   E+   +SKR ++ N ET   +SG  ++E E  D
Sbjct: 241 PDITMRIDKEALPFMKNINQLSERLLEKSLGNSKRFNNENEETYLKESGFHDLEEEASD 299


>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
           complex subunit Spp27|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 233

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/59 (22%), Positives = 25/59 (42%)
 Frame = +3

Query: 216 EDKVPDKKPLVPEKANDVQKNVTKVTKAGSERPKASSKRNDSSNSETDSGEMERERPDP 392
           E   P +K  + ++A   +    + T+ G+E  K  +KR      + + G   +   DP
Sbjct: 54  ETAAPSEKESLEKQAPARKTKGKRATENGTEEGKKPAKRTRKRKEDGEEGGKRKRNQDP 112


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 8/40 (20%), Positives = 22/40 (55%)
 Frame = +3

Query: 9   ARTPENVPMYDETVVVDASEIDSPSSDEEVVRATMAKFNP 128
           + +P+N+P+   + VV +  + +P +  + +     K++P
Sbjct: 341 SNSPDNIPLIQNSSVVSSKILQNPQNSFQALIIAALKYDP 380


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +3

Query: 198 LGNTSLEDKVPDKKPLVPEKANDVQKNVTKVTKAGSERPKASSKRNDSSNSETDS 362
           L +T  ED +   + L  EKA  +Q+   +  +   ++PK  +K+  SS+S  +S
Sbjct: 746 LSHTLSEDPLIKVEEL-EEKAKRLQELTYEYLRRSLQQPKLKAKKGASSSSTAES 799


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/63 (23%), Positives = 27/63 (42%)
 Frame = +3

Query: 192 NFLGNTSLEDKVPDKKPLVPEKANDVQKNVTKVTKAGSERPKASSKRNDSSNSETDSGEM 371
           + L + S    + DK   + E   +++KN        +   ++ SKRN    SE ++   
Sbjct: 623 SILSHNSSAGNIDDKMKSIDESTRELEKNYEVYRNEMTAIQESLSKRNQDLLSEMEAIRK 682

Query: 372 ERE 380
           E E
Sbjct: 683 ELE 685


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 453 PKLYQDLKVPPEMENIFQYIM 515
           PKL+  + VPP M+N   Y+M
Sbjct: 174 PKLHFPIPVPPAMKNHGNYVM 194


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 456 KLYQDLKVPPEMENIFQYIMKYTPQKIDIDFK 551
           KL +D  V   +E++FQ I  Y P+ ++   K
Sbjct: 78  KLVEDPTVHNTLEDVFQDIESYKPKSVNTSAK 109


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
 Frame = +3

Query: 222 KVPDKKPLVPEKANDV--QKNVTKVTKAGSERPKASSKRNDSSNSETDSGEMERERPDPL 395
           +VPD  PL+ E AN++  QK +  + K   E  + S +  +    E ++   E ++   L
Sbjct: 102 EVPDPYPLLIEAANNLKTQKQIEDLKKE-KEEMEGSLQGKEKLEREVENLRKELDKYKDL 160

Query: 396 IGSGRKRGGVVIPAE----GAYDPKLYQDLK 476
           + +  ++   +   E         KLY+D++
Sbjct: 161 VETEAEKRAAITKEECEKSWLEQQKLYKDME 191


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 24  NVPMYDETVV--VDASEIDSPSSDEEVVRATMAKFNPPV 134
           N P+  E ++  +DAS     S  EE+++  + +  PP+
Sbjct: 285 NAPLNVEMIMNDIDASSFIKRSDFEELIKPLLERLTPPI 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,470
Number of Sequences: 5004
Number of extensions: 47974
Number of successful extensions: 198
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)