Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23e04
         (413 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   1.6  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   2.7  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   6.3  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    20   8.3  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +2

Query: 20  LKTENAAYTLVSSNIPCVFNDSQNARLSSRDEVKEDP 130
           + ++    T  +  I CV      + L  R+E+K DP
Sbjct: 149 INSDTMCVTFSNLGIQCVKKKDIESALRLREEIKVDP 185


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 116 VKEDPSRLPMRRRTPDISERGILRSHPLYV 205
           +KE P+   +R+ T +I+    +R HP  V
Sbjct: 485 LKESPTSEEIRQFTQEINIMKSVRQHPYIV 514


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = +2

Query: 71  VFNDSQNARLSSRDEVKE--DPSR 136
           + ND QNA+     +VK   DPS+
Sbjct: 344 LLNDPQNAKTQKAFQVKRVPDPSK 367


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 201 YRGCDRRIPLSDISGVRLRIGNRLGSSLTSSRLESRAFWESLKTH 67
           Y   +RR   + +SG++L + N L  SL  +         +LK H
Sbjct: 49  YSVYERRYMNAHLSGIQLVVRNLLDISLYLNAYHVFVTMMTLKRH 93


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,690
Number of Sequences: 336
Number of extensions: 1733
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9068614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)