Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23e04
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    27   0.87 
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   3.5  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    25   3.5  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   4.7  

>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 27.5 bits (58), Expect = 0.87
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 110 DEVKEDPSRLPMRRRTPDISERGILRSH-PLY 202
           DEVKE+ SR  +  R    ++ G L S+ PLY
Sbjct: 460 DEVKEEKSRFHLGHRRSSTADNGTLSSNVPLY 491


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 234 CSTCATIYDLAKPPSWKTKA 293
           C  C T Y +AKPP  K+ A
Sbjct: 60  CPQCLTAYRIAKPPKEKSWA 79


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 47  LVSSNIPCVFNDSQNARLSSRDEVKE 124
           L+  NIP V  D +NA +    EVKE
Sbjct: 529 LIDINIPEVVTDGENAPVDILSEVKE 554


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 283 FQDGGLARSYIVAQVEQKPTKQSTSVD 203
           F++ GLA S I + +E  P   STS D
Sbjct: 226 FEEQGLAYSTIFSHIESFPITGSTSFD 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,633,680
Number of Sequences: 5004
Number of extensions: 32414
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)