Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23e04
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0358 - 15147545-15147884,15147959-15148161                       28   3.4  
04_03_0667 - 18513252-18513512                                         28   3.4  
05_03_0682 - 16916437-16916686,16916761-16916822,16917082-169171...    27   5.9  
04_03_0306 + 14136338-14136686,14137408-14137442,14137701-141377...    27   7.8  
02_01_0205 - 1379448-1379696,1379827-1379901,1379983-1380056,138...    27   7.8  
01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138...    27   7.8  

>06_02_0358 - 15147545-15147884,15147959-15148161
          Length = 180

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -1

Query: 272 WFSQIVYSGTSRTETNEAEHERRRIEDAIEESPFQIYRASV 150
           W S +  S  +   +N  EH+R  +++ +   P  + RA V
Sbjct: 13  WLSSVYASPAAIDGSNRFEHKRENVKNVLAHPPVVVVRAMV 53


>04_03_0667 - 18513252-18513512
          Length = 86

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -1

Query: 251 SGTSRTETNEAEHERRRIEDAIEES---PFQIYRASVFALV 138
           S   R      E ERRR+E A+EE     F+  RA+  AL+
Sbjct: 26  SAYRRNRRRREEEERRRVEAAVEEMEGWEFEAMRANYLALM 66


>05_03_0682 -
           16916437-16916686,16916761-16916822,16917082-16917147,
           16917606-16917737,16917925-16918026,16918146-16918343,
           16918409-16918555,16918804-16918914,16919661-16920194,
           16920269-16920425,16920511-16920660,16920744-16920883,
           16921668-16921784,16922759-16922932,16923020-16923187,
           16923323-16923464,16923610-16923728,16924997-16925098,
           16925618-16925701,16926843-16927142
          Length = 1084

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 262 WLNHHLGKLKLVNSFKHCHVFEFTLL 339
           +LNH LG L +VNS + C   E + L
Sbjct: 234 YLNHFLGNLDIVNSPEVCKFLEVSCL 259


>04_03_0306 +
           14136338-14136686,14137408-14137442,14137701-14137778,
           14138046-14138124,14138731-14138823,14139472-14139556,
           14140270-14140345,14140669-14140794,14141039-14141137,
           14141238-14141339,14141561-14141671,14141809-14141904,
           14142488-14142539,14142624-14142735,14142879-14142943,
           14144124-14144521,14145236-14145330,14145989-14146015,
           14146081-14146156,14146368-14146421,14146741-14146863,
           14146955-14147023
          Length = 799

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 263 QIVYSGTSRTETNEAEHERRRIEDAIEESPF 171
           +I YSGT    +NE E +   +  + ++SP+
Sbjct: 504 RIGYSGTRAGRSNETEEDAPEVTQSAQQSPY 534


>02_01_0205 -
           1379448-1379696,1379827-1379901,1379983-1380056,
           1380150-1380237,1380327-1380475,1380688-1380847,
           1380933-1381088,1381177-1381365,1381481-1381714,
           1381785-1382009,1382097-1382177
          Length = 559

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 233 ETNEAEHERRRIEDAIEESPFQIYRASV 150
           +  EAE +RR +  A+EE    +YR  V
Sbjct: 32  QIGEAEEDRREMLHALEEDCLNVYRVKV 59


>01_01_0161 -
           1385408-1385566,1385815-1385943,1386164-1386322,
           1387228-1387571,1387641-1387905,1387998-1388075,
           1388207-1388260,1389341-1389361,1389453-1389578,
           1389696-1389863,1389923-1390313,1390629-1390710,
           1391175-1391536,1391806-1392630,1392956-1393476
          Length = 1227

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 128 PSRLPMRRRTPDISERGILRSHPLYVYA-RALLRWFLFY-LCHYIRSG 265
           P    M   TP++  RGI RSH  Y+ A +  LR   F  LC  + +G
Sbjct: 566 PRAAAMANDTPELLSRGIDRSHRSYLSAVQGGLRAVGFLPLCRLVEAG 613


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,894,322
Number of Sequences: 37544
Number of extensions: 187465
Number of successful extensions: 486
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)