Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23e04
         (413 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    26   0.15 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     26   0.15 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.8  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   4.2  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   4.2  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   4.2  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   4.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   9.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   9.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   9.6  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 26.2 bits (55), Expect = 0.15
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 20  LKTENAAYTLVSSNIPCVFNDSQNARLSSRDEVKEDPSR 136
           + +EN   T  +  I CV        L  R+E++ DP R
Sbjct: 131 VSSENMTVTFANLGIQCVKKKDIEEALKIREEIRVDPFR 169


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 26.2 bits (55), Expect = 0.15
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 20  LKTENAAYTLVSSNIPCVFNDSQNARLSSRDEVKEDPSR 136
           + +EN   T  +  I CV        L  R+E++ DP R
Sbjct: 131 VSSENMTVTFANLGIQCVKKKDIEEALKIREEIRVDPFR 169


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 31  KCSIHVGLVKYSVRFQRLPK 90
           KC I VG+ + +VRF R+PK
Sbjct: 127 KC-IAVGMSRDAVRFGRVPK 145


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 178 PPFRYIGRPSS 146
           P FRYIG P+S
Sbjct: 373 PRFRYIGPPTS 383


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 178 PPFRYIGRPSS 146
           P FRYIG P+S
Sbjct: 373 PRFRYIGPPTS 383


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 178 PPFRYIGRPSS 146
           P FRYIG P+S
Sbjct: 373 PRFRYIGPPTS 383


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 178 PPFRYIGRPSS 146
           P FRYIG P+S
Sbjct: 362 PRFRYIGPPTS 372


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 203 VYARALLRWFLFYLCHYIR 259
           +Y   +L W LFYL   +R
Sbjct: 113 IYYIIILAWALFYLLVSLR 131


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 203 VYARALLRWFLFYLCHYIR 259
           +Y   +L W LFYL   +R
Sbjct: 166 IYYIIILAWALFYLLVSLR 184


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 116  VKEDPSRLPMRRRTPDISERG 178
            V E P R+P    +P  S+RG
Sbjct: 1365 VPERPERVPTVDLSPSPSDRG 1385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,526
Number of Sequences: 438
Number of extensions: 2358
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)