Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23e03
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    29   0.30 
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    27   1.2  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   1.6  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   3.7  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    25   4.9  
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   4.9  
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   4.9  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    24   8.5  
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    24   8.5  

>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 28.7 bits (61), Expect = 0.30
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 205 DRRNIPDIDNSNLYQHHYQESHRWCTEIYQLEN*EDIRTEL*DHLK 68
           DR   PD +   L  H Y E      ++ ++E+   ++T++ D LK
Sbjct: 307 DRSRYPDFNARKLVYHAYVEQSAVINDLLEIEDASLLKTDISDELK 352


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 221 TICIYILGPAGNLALKREENLENHQ 295
           +IC +I    GN AL R+    NH+
Sbjct: 339 SICFFIYAAVGNRALTRKNGTSNHR 363


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 323  IFKTFPNGVVGGFQGFLPVLALGFR 249
            I +TFP   VG +QG   ++  GFR
Sbjct: 1695 IMETFPQNWVGDYQGLQILILKGFR 1719


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 64  LPSNDLITRFECLPNFPTGIF 126
           LP ND   R+E + + PTG +
Sbjct: 692 LPFNDFRVRYEIMAHLPTGTY 712


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 128 RNIPVGKLGRHSNRVMRSFEGKQWPYFRQFYFK 30
           +NI V K+ R   +      GK W Y  Q+Y +
Sbjct: 234 QNIDVEKVFRAGIKRFSDQAGKLWTYLAQYYIR 266


>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 242

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 163 DKGCCYQCPEYFAYQHM 213
           +KGC + CP Y    H+
Sbjct: 17  EKGCLHSCPSYSVNNHV 33


>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 163 DKGCCYQCPEYFAYQHM 213
           +KGC + CP Y    H+
Sbjct: 17  EKGCLHSCPSYSVNNHV 33


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = -1

Query: 143 SPVVHRNIPVGKLGRHSNRVMRSFEGKQ----WPYFRQFYFKQILKE 15
           +P V  N+   K    S ++   + GK+    WPY R+ Y +  + E
Sbjct: 748 NPSVIVNVEDVKSALTSEQIAMQYVGKRIFVDWPYLREAYVESAMDE 794


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 221 TICIYILGPAGNLALKREENLENHQ 295
           +IC +I    G+ AL R     NH+
Sbjct: 341 SICFFIYASVGDRALTRPNGTSNHR 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,419,284
Number of Sequences: 5004
Number of extensions: 27359
Number of successful extensions: 64
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)