Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23e03
         (365 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0787 + 11180794-11180958,11181051-11181230,11181396-111816...    28   2.0  
01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242           28   2.0  
02_01_0039 - 271926-273503                                             28   2.6  
01_01_1161 + 9244628-9245748,9247696-9247828,9248233-9248448,924...    27   4.5  
01_06_1615 - 38652493-38652668,38652896-38653043,38653125-386533...    26   7.9  

>03_02_0787 +
           11180794-11180958,11181051-11181230,11181396-11181611,
           11181693-11181875,11182013-11182234,11182434-11182550,
           11182682-11182825,11183198-11183299,11183762-11183830,
           11184283-11184516
          Length = 543

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 92  NRVMRSFEGKQWPYFRQFYFKQILK 18
           N V+  F+   W Y    YFKQI+K
Sbjct: 340 NNVLTDFDRDMWTYISLGYFKQIVK 364


>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
          Length = 417

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
 Frame = +1

Query: 55  GH--CLPSNDLITRFECLPN---FPTGIFRCTTGETLGSGADKGCCYQ---CPEYFAYQH 210
           GH  C P  D +      P+   F T   RC   E + +  +  C Y    CP+  AY +
Sbjct: 56  GHLVCSPCRDNLPAGGKCPSPSCFGTPSVRCVAMERVVNSVEVACAYAEHGCPDKIAYAN 115

Query: 211 MTFYDLHLYLRPCRKPSAKTG 273
           +T ++      PC  P    G
Sbjct: 116 ITEHEKTCPHAPCFCPEPGCG 136


>02_01_0039 - 271926-273503
          Length = 525

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 124 FRCTTGETLGSGADKGCCYQCPEYFAYQH 210
           FR      +    +KG C+ CPE F+  H
Sbjct: 263 FRRLLAAEMAERREKGLCFNCPEKFSKDH 291


>01_01_1161 +
           9244628-9245748,9247696-9247828,9248233-9248448,
           9249802-9249957,9250788-9250979,9251118-9251234,
           9251822-9252193
          Length = 768

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -1

Query: 170 PLSAPLPRVSPVVHRNIPVGKLGRHSNRVMRSFEGKQ 60
           PL +P P  SP  HR   + +L R S RV RS  G +
Sbjct: 247 PLPSPSPSTSPRTHRAGSILRL-RLSTRVQRSSGGSK 282


>01_06_1615 -
           38652493-38652668,38652896-38653043,38653125-38653340,
           38653572-38653701,38653801-38653823,38654238-38654292,
           38654370-38654428,38654516-38654569
          Length = 286

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 176 QQPLSAPLPRVSPVVHRN 123
           Q P S PLPR+S  V RN
Sbjct: 119 QLPKSLPLPRISAAVERN 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,805,997
Number of Sequences: 37544
Number of extensions: 172412
Number of successful extensions: 407
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)