Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23d23
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0289 + 2170820-2170880,2170997-2171070,2171312-2171420,217... 36 0.021
01_05_0714 + 24555494-24555637,24555884-24556071,24556195-245562... 33 0.26
01_06_1446 - 37409074-37409783,37409896-37409986,37410645-374119... 32 0.46
11_01_0286 + 2128109-2128175,2128264-2128337,2128566-2128674,212... 31 0.61
10_01_0162 + 1820761-1821855 29 2.4
06_01_1059 + 8512335-8513444 29 4.3
08_02_1429 + 27040293-27040523,27041618-27041739,27042290-270423... 28 7.5
07_03_1706 + 28855669-28855801,28856013-28856044,28856158-288562... 28 7.5
04_04_1486 + 33918611-33918955 28 7.5
03_01_0058 - 478708-478731,478802-478834,478953-479100,479423-48... 28 7.5
03_02_1028 - 13444284-13445381 27 9.9
>12_01_0289 +
2170820-2170880,2170997-2171070,2171312-2171420,
2171464-2171508,2171835-2171917,2172069-2172227,
2173454-2173555,2173639-2173788
Length = 260
Score = 36.3 bits (80), Expect = 0.021
Identities = 20/78 (25%), Positives = 38/78 (48%)
Frame = +3
Query: 345 WPSDSDITVLRMKKCLTNDALKRNDGNPGDGFHQPDTSSMVNLATLIKQSRTPSKHSINM 524
WP + I V ++ + + +DG D F D L +KQS T K+ ++
Sbjct: 86 WPLNVQICVGSSEELPVSAFCRTSDGE-WDAFRSIDMDVEARLMQQMKQSSTKQKNHVDS 144
Query: 525 EEYLLPLTSWEKVDQENK 578
+E L+ L +W ++D++ +
Sbjct: 145 DE-LIALNAWHRIDRQTR 161
>01_05_0714 +
24555494-24555637,24555884-24556071,24556195-24556280,
24556359-24556461,24556798-24557000,24557077-24557681,
24557784-24557918,24558040-24558067,24559517-24559596,
24559873-24559975,24560553-24560635,24560915-24561017,
24561596-24561720,24562001-24562103,24562647-24562726,
24563322-24563429,24563521-24563565
Length = 773
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 6/50 (12%)
Frame = +3
Query: 414 NDGNPGDGF---HQPDTSSMVNL---ATLIKQSRTPSKHSINMEEYLLPL 545
++ NP DG QP +S + + + L+K+ T S+HS+++EE ++P+
Sbjct: 400 SESNPPDGVTTDEQPTENSPIGVDRDSELVKEKGTSSRHSVSLEEDVMPI 449
>01_06_1446 -
37409074-37409783,37409896-37409986,37410645-37411988,
37412062-37412709,37412801-37412852,37413141-37413214,
37414370-37414419,37414488-37414569,37414779-37414828,
37414907-37414949,37415030-37415110,37415198-37415243,
37415336-37415382,37415467-37415532,37415612-37415678,
37415761-37415858
Length = 1182
Score = 31.9 bits (69), Expect = 0.46
Identities = 20/81 (24%), Positives = 36/81 (44%)
Frame = +3
Query: 378 MKKCLTNDALKRNDGNPGDGFHQPDTSSMVNLATLIKQSRTPSKHSINMEEYLLPLTSWE 557
+K C +D +K N G + D+S +++ ++ R K +++ L L
Sbjct: 343 VKNCSRSDDVKSNKETVGPELERQDSSKSIHVD---QRPRNEIKQPKIIKKILTTLREES 399
Query: 558 KVDQENKPCDLENDKINNPFN 620
K+ Q N P K+N+P N
Sbjct: 400 KLRQNNSPIRASRVKLNSPSN 420
>11_01_0286 +
2128109-2128175,2128264-2128337,2128566-2128674,
2129138-2129220,2129333-2129491,2130407-2130508,
2130595-2130741
Length = 246
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 432 DGFHQPDTSSMVNLATLIKQSRTPSKHSINMEEYLLPLTSWEKVDQENK 578
D F D L +KQS T K+ ++ +E L+ L SW +D++ +
Sbjct: 101 DAFRSIDMDVEARLVQQMKQSSTKQKNHLDRDE-LVALNSWHHIDRQTR 148
>10_01_0162 + 1820761-1821855
Length = 364
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 351 SDSDITVLRMKKCLTNDALKRNDGNPGDGFHQPDTSSMVNLATLIKQSRTPSKHSINMEE 530
++ D T+ + L+R G + +P S +++ R P+ H + M E
Sbjct: 221 AEHDSTLWKPMYTKLRSQLRRRLRFLGVSYGEPTAVSWKARYVAVRRRRVPAAHDVFMGE 280
Query: 531 YLLP-LTSWEKV 563
LLP +T W +V
Sbjct: 281 ILLPVMTEWMRV 292
>06_01_1059 + 8512335-8513444
Length = 369
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 456 SSMVNLATLIKQSRTPSKHSINMEEYLLPLTSWEKVDQENKPCDLENDKINNPFNPKH 629
S +N+ IK S T + +N+E+ P+ + QEN E N +NP H
Sbjct: 265 SQQLNIGGEIK-SETNGSNEVNIEQANQPVPVQQDQSQENNSSGREQQVCFNCYNPGH 321
>08_02_1429 +
27040293-27040523,27041618-27041739,27042290-27042392,
27042530-27042620,27042851-27043023,27043379-27043467,
27044212-27044319,27044408-27044498,27044708-27044797,
27045587-27045658,27045756-27045849,27045940-27046087,
27046961-27047222
Length = 557
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = -2
Query: 181 CRTLKCPSPFCISMISSIFVIRLPFDN*DVKSISVKFK*FFLQSFVLNSR 32
C +L+CP P C +M+ + +L D D K V++ F L+++V +S+
Sbjct: 195 CLSLRCPDPSCGAMVLQNMINKLAKD--DDK---VRYARFILRAYVEDSK 239
>07_03_1706 +
28855669-28855801,28856013-28856044,28856158-28856229,
28856631-28856727,28857195-28857256,28857726-28858024,
28858306-28858663,28858692-28859297,28859500-28859698,
28860039-28860101,28860603-28860673
Length = 663
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 126 KIEDIIDMQKGEGHFNVRQVAF 191
K+ I+DM + E HF+++Q AF
Sbjct: 260 KLRQILDMTEDEAHFHMKQSAF 281
>04_04_1486 + 33918611-33918955
Length = 114
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 368 RIKNEKVLDQRCSEKK*WKSWGWFPP 445
RI NE R S + W+ WGW PP
Sbjct: 78 RIGNED--GSRASSSQRWRRWGWPPP 101
>03_01_0058 -
478708-478731,478802-478834,478953-479100,479423-480072
Length = 284
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = -3
Query: 450 LVGGNHPQDFHHFFSEH---RWSSTFSFLIRLYLNRLAKKQHQA 328
L GG D+HHF H +SS F+F +Y + H+A
Sbjct: 230 LYGGVEYHDYHHFVGGHSQSNFSSVFTFCDYIYGTDRGYRYHKA 273
>03_02_1028 - 13444284-13445381
Length = 365
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +3
Query: 456 SSMVNLATLIKQSRTPSKHSINMEEYLLPLTSWEKVDQENKPCDLENDKINNPFNPKHDL 635
S +N+A IK S T + +N+E+ P+ + QEN E N + P H +
Sbjct: 265 SQQLNIAGEIK-SETNESNEVNIEQANQPVPVQQDQSQENNSNGREQRVCFNCYEPGHFV 323
Query: 636 K 638
K
Sbjct: 324 K 324
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,500,251
Number of Sequences: 37544
Number of extensions: 294596
Number of successful extensions: 694
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -