Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23d19
(537 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 33 0.14
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 28 5.4
04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581 27 7.2
02_05_1137 - 34372803-34372869,34373088-34373229,34373334-343734... 27 7.2
07_03_1601 - 28047764-28047845,28048043-28048078,28048209-280483... 27 9.5
04_04_0884 + 29084341-29084590,29084670-29084800,29084890-290851... 27 9.5
03_06_0301 - 32974276-32974638,32974842-32974967,32975056-329751... 27 9.5
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 33.1 bits (72), Expect = 0.14
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +2
Query: 251 RVPNAPKSCIAEIFNGDMTDG-SPKKNGMARQRVVRDTPTRPRDTHSRLFGQAASNGPVS 427
+VPN+P I I G + SP++ R+R+V D + + RL A+ P+S
Sbjct: 553 QVPNSPS--IPTIGGGPKVESLSPRERAAERERMVLDIKVKLQGLWLRLLRLGATEDPLS 610
Query: 428 PLITDTIRSNIQFGDSEMNGGS 493
TI + I+ D+E GGS
Sbjct: 611 SFEYGTILALIE-SDAEGIGGS 631
>02_01_0471 -
3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 109 NVCWPSGGFQELHNQVHFNDRVEEC 183
++CWP+ Q H Q + RV+ C
Sbjct: 376 SICWPAFMLQGFHQQKALDSRVQNC 400
>04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581
Length = 521
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 498 VGLPPFISESPNWMLLR 448
V + PF+SESP W L+R
Sbjct: 249 VAVLPFVSESPRWYLVR 265
>02_05_1137 -
34372803-34372869,34373088-34373229,34373334-34373403,
34373521-34373823,34374215-34374280,34374425-34374490,
34374584-34374682,34376153-34376310,34376951-34377039,
34377209-34377591
Length = 480
Score = 27.5 bits (58), Expect = 7.2
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +2
Query: 320 KKNGMARQRVVRDTPTRPRDTHSRL--FGQAASNGPVSPLITDTIRSNIQFGDSEMNGGS 493
K + RQ+ +D P D H+RL QAA P +TD RS + E G S
Sbjct: 159 KVTSLTRQQ--QDRYAAPPDEHARLEQHQQAAHAHPCGDELTDPERSRRKHCTGEALGSS 216
Query: 494 PTHSPAK 514
+ P +
Sbjct: 217 ESEQPTR 223
>07_03_1601 -
28047764-28047845,28048043-28048078,28048209-28048339,
28048695-28048967,28049039-28049166,28049250-28049369,
28049461-28049538,28049598-28049669,28049790-28049849,
28050096-28050217,28052918-28053048,28053382-28053534,
28053628-28053755,28053831-28053968,28054056-28054144,
28055741-28055878,28056870-28057102
Length = 703
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 353 RDTPTRPRDTHSRLFGQAASNGPVSPLITDTIRS 454
++TP PRDT +L G +SP I D S
Sbjct: 644 KETPYLPRDTILKLLSYFDGEGDISPEIMDNQNS 677
>04_04_0884 +
29084341-29084590,29084670-29084800,29084890-29085132,
29085223-29085481,29085597-29085832
Length = 372
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -1
Query: 531 ALPFIILAGECVGLPPFISESPNWMLLRMVSVINGETGP 415
AL FI AGEC +++ N L RM+ +N E GP
Sbjct: 234 ALEFIP-AGECSAFANQLTQGYNKKLKRMIYKLNQEMGP 271
>03_06_0301 -
32974276-32974638,32974842-32974967,32975056-32975131,
32975935-32976130,32976666-32976759,32977773-32978195
Length = 425
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -3
Query: 340 ARHAVLLGAAVCHIAIEDFCDAALRRVRHPQLDQVDASVDSRILQIDV 197
A H L A V + +E+ + LRR+ DA+VD+R+L+ DV
Sbjct: 254 AAHLNELEAQVSQLRVEN--SSLLRRLADVNQKYNDAAVDNRVLKADV 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,661,356
Number of Sequences: 37544
Number of extensions: 334246
Number of successful extensions: 936
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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