Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23d19
         (537 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr...    28   3.7  
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AL132847-4|CAB63373.3|  965|Caenorhabditis elegans Hypothetical ...    27   6.5  

>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical
           protein C23F12.1a protein.
          Length = 2329

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +2

Query: 221 VNTCIDLVELRVPNAPKSCIAEIFNGDMTDGSPKKNGMARQRVVRDTPTRPRDTHSRLFG 400
           V++C  L+ +   N+    I   FNG+   GSP K  +  +   R    R    +S L G
Sbjct: 15  VDSCRFLINITNNNSMTHTIEMRFNGEHVSGSPWKLPVEDRGERRQEMERTMSYYSELSG 74

Query: 401 QAASNGPVS 427
                 PV+
Sbjct: 75  PGLVRAPVN 83


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical
           protein C23F12.1b protein.
          Length = 2747

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +2

Query: 221 VNTCIDLVELRVPNAPKSCIAEIFNGDMTDGSPKKNGMARQRVVRDTPTRPRDTHSRLFG 400
           V++C  L+ +   N+    I   FNG+   GSP K  +  +   R    R    +S L G
Sbjct: 15  VDSCRFLINITNNNSMTHTIEMRFNGEHVSGSPWKLPVEDRGERRQEMERTMSYYSELSG 74

Query: 401 QAASNGPVS 427
                 PV+
Sbjct: 75  PGLVRAPVN 83


>AL132847-4|CAB63373.3|  965|Caenorhabditis elegans Hypothetical
           protein Y48G10A.4 protein.
          Length = 965

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +2

Query: 206 LENSAVNTCIDLVELRVPNAPKSCIAEIFNGDMTDGSPKKNGMARQRVVRDTPTRP 373
           +EN + +  +D V L   +    C++E+     T G  ++      RVV+ T T P
Sbjct: 232 IENPSADFEVDKVLLSAGDVSNKCLSELVTFLFTSGELQEAKKILTRVVKPTVTHP 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,802,327
Number of Sequences: 27780
Number of extensions: 265277
Number of successful extensions: 726
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)