Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23d19
         (537 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   4.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   6.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 126  GRPTNIKVDDISQ 88
            G PT+I+VDD+ Q
Sbjct: 978  GPPTSIRVDDLDQ 990


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -1

Query: 366 VGVSRTTRWRAMPFFLGLPSVISPLKISAMQLLGALGTRNSTRS 235
           +G++     R     + +P  +S  KIS +  LGA   R  T +
Sbjct: 111 IGLAMAAAVRGYKCIIVMPEKMSDEKISTLYALGAKIIRTPTEA 154


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +2

Query: 320 KKNGMARQRVVRDTPTRPRDTHSRLFGQAASNGPVSPLITDTIRSNIQFGDSEM 481
           K N   +++ V D      D   R  G+ A++GP    +   +RS     D +M
Sbjct: 25  KVNYREKEKEVLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKM 78


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +2

Query: 320 KKNGMARQRVVRDTPTRPRDTHSRLFGQAASNGPVSPLITDTIRSNIQFGDSEM 481
           K N   +++ V D      D   R  G+ A++GP    +   +RS  +  D  M
Sbjct: 25  KVNYREKEKEVLDNILGGYDARIRPSGENATDGPAVVRVNIFVRSISKIDDVTM 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,439
Number of Sequences: 438
Number of extensions: 3052
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)