Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23d16
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   3.7  
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    25   8.7  

>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = -2

Query: 217 RXFTGHTPASTYFSRTKN-NNIVNTTATAWSSLIFNMKT*SCFEFYCYFVYNKVLTLXYK 41
           R  TG+T   T   R ++  N +   AT   SLIF      CF  Y   VY     + Y 
Sbjct: 300 RKTTGNTAYYTIHERERDPKNAMIQAATQAVSLIFTEPIVVCFTLYLTVVY----IINY- 354

Query: 40  VTNIEGQPL 14
             N EG P+
Sbjct: 355 -INFEGYPI 362


>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 175 RTKNNNIVNTTATAWSSLIFN 113
           +T N    NTT  AWS ++ N
Sbjct: 149 QTSNPRFANTTREAWSKIVTN 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,890,951
Number of Sequences: 5004
Number of extensions: 31468
Number of successful extensions: 124
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)