Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23d16
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0261 - 21919017-21920594                                         28   5.0  
05_01_0173 - 1199668-1199685,1199907-1199969,1200277-1200379,120...    27   8.8  

>09_06_0261 - 21919017-21920594
          Length = 525

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 86  KFKAALCFHIKDEAAPRSSCCVHYVVVLCAR 178
           +   A+CF + D    RS+ C H+  V C R
Sbjct: 130 RLTCAICFDVFDTGGMRSAGCSHFYCVSCWR 160


>05_01_0173 -
           1199668-1199685,1199907-1199969,1200277-1200379,
           1201408-1201514
          Length = 96

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 531 LVCLLLSFCVKXLXFRTNYNN 593
           ++CLLLSFC+  L ++  Y N
Sbjct: 34  VMCLLLSFCLNSLSWQHEYRN 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,251,571
Number of Sequences: 37544
Number of extensions: 171768
Number of successful extensions: 361
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)