Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23d15
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0110 + 18225431-18226992,18227158-18228132,18228343-182284... 33 0.16
11_04_0169 + 14397380-14397652,14398317-14398874,14399593-143998... 33 0.21
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 33 0.21
11_04_0196 - 14740121-14740468 31 0.84
01_06_1608 - 38612754-38616947,38617030-38617095 29 2.6
07_03_1304 - 25629822-25629839,25630091-25631148,25631784-256349... 29 4.5
05_04_0233 + 19265553-19265703,19265805-19265826,19266788-192669... 29 4.5
01_01_0138 + 1253256-1253534,1253625-1254359 29 4.5
06_03_0219 - 18227559-18227858,18227864-18228340 28 6.0
05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22... 28 6.0
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488... 28 6.0
01_01_0501 - 3682100-3682148,3682263-3682341,3682434-3682511,368... 28 6.0
08_01_0070 + 490655-493165 28 7.9
04_04_1193 + 31634043-31634349,31634685-31634847,31635048-316366... 28 7.9
04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628 28 7.9
03_06_0555 - 34693067-34693196,34693450-34693688,34693956-346940... 28 7.9
>01_05_0110 +
18225431-18226992,18227158-18228132,18228343-18228437,
18228556-18228842
Length = 972
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3
Query: 376 VVHPSTGADGFM*HRLGAYDSGIFGCL*HGLTMGGFPQQQDRHGQ 242
++H + GF H+LG + I C G+T G P +Q RHG+
Sbjct: 35 LLHWKSTLKGFSQHQLGTWRHDIHPCNWTGITCGDVPWRQRRHGR 79
>11_04_0169 +
14397380-14397652,14398317-14398874,14399593-14399823,
14399924-14400064,14401051-14401248,14401319-14401591,
14401959-14401976
Length = 563
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 549 HDMWGQGPHAEHHHTTTRLRAQAEYTTREL*ASTEISLRR 668
H W PHA HHH+T+ L + + +T +S+ S R
Sbjct: 7 HFKWAPCPHAHHHHSTSSLPSSSSSSTSAPSSSSRCSFSR 46
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 33.1 bits (72), Expect = 0.21
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = +3
Query: 153 IMPECLPCPAAGIKSGLRDGKPIDGDMRPNCPCRSCCCGKP-PIVKPCY-KQPKIPESYA 326
+ P LP P K + P D +P PC C C KP P KPC+ ++PK
Sbjct: 77 VWPPPLPQPPPPCKPPPCEKPP--EDCKPK-PCHCCSCEKPKPKPKPCHCEKPKPCHCEK 133
Query: 327 PRRCYIKPSAPVE 365
P+ C P E
Sbjct: 134 PKPCEKPPPCKPE 146
>11_04_0196 - 14740121-14740468
Length = 115
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 548 PRHVGPGSPCRTSPHNDTTTCPSRVYYERALS 643
PR+ GP + T+PH CP V+ ++ LS
Sbjct: 37 PRNTGPAASNPTTPHISAANCPLNVHAKKKLS 68
>01_06_1608 - 38612754-38616947,38617030-38617095
Length = 1419
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 469 GSQLGTMLGEGFFTSPRRFLHPSTGRYD 386
GS +G+ LG G S RF+H +GR++
Sbjct: 1259 GSDVGSSLGSGGDMSQPRFIHNESGRFE 1286
>07_03_1304 -
25629822-25629839,25630091-25631148,25631784-25634928,
25635454-25636293
Length = 1686
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +3
Query: 537 RPCHHDMWGQGPHAEHHHTTTRLRAQAEY 623
RP WG PH HHH + + Q Y
Sbjct: 8 RPFRPPDWGPPPHRYHHHHQNQYQYQQRY 36
>05_04_0233 +
19265553-19265703,19265805-19265826,19266788-19266914,
19267814-19267904,19268008-19268097,19268194-19268294,
19268945-19269081,19271315-19271511,19271600-19271621,
19272343-19272466,19273158-19273248,19273378-19273467,
19273562-19273662,19278576-19278716
Length = 494
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 261 CCGKPPIVKPCYKQPKIPESYAPRRCYIKPSA 356
CC PP + P + K+ ES+ + Y+ +A
Sbjct: 6 CCANPPTLNPAGGEGKVVESFGGIKAYVAGAA 37
>01_01_0138 + 1253256-1253534,1253625-1254359
Length = 337
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -1
Query: 612 GHVVVSLCGDVLHGDPGPTCRGGRAGSTASRTPG 511
GH+ S C + G TC GG G +R PG
Sbjct: 97 GHLACSSCHGDVPGKKCHTCGGGGGGGVYARCPG 130
>06_03_0219 - 18227559-18227858,18227864-18228340
Length = 258
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/81 (28%), Positives = 31/81 (38%)
Frame = +3
Query: 156 MPECLPCPAAGIKSGLRDGKPIDGDMRPNCPCRSCCCGKPPIVKPCYKQPKIPESYAPRR 335
+P C P PAA S +R RP P PP + + P+ P PRR
Sbjct: 71 LPRCRPPPAACAASTVR---------RPAAPSPPPASPPPPPPRLALRFPRRPPELPPRR 121
Query: 336 CYIKPSAPVEGCTTYKLSYLP 398
+ SAP +L+ P
Sbjct: 122 RPSRFSAPAASSRLSRLARAP 142
>05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-225084,
225296-225356,225666-226918
Length = 1891
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 469 GSQLGTMLGEGFFTSPRRFLHPSTGRYD 386
GS +G LG G S RF+H +GR++
Sbjct: 1255 GSDVGGSLGSGGDMSQPRFIHNESGRFE 1282
>03_05_0890 -
28547462-28547545,28548451-28548528,28548641-28548814,
28548902-28548958,28549065-28549116,28549907-28549995,
28550259-28550344,28550427-28550637,28551790-28551882,
28551958-28552098,28552175-28552267,28553879-28554113,
28554263-28554435,28555234-28556571,28556668-28556853,
28557625-28557713,28557756-28557905,28557951-28558596
Length = 1324
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 475 KGVPFKSCHTYRTRCA*RSRSGPATTTCGARVPMQNITTQRHDYV 609
K +P +C +TR +S G AT++ G+ P +TT R +++
Sbjct: 744 KNLPSMTC---KTRFGPKSDHGMATSSAGSMTPRSPLTTPRSNHI 785
>01_01_0501 -
3682100-3682148,3682263-3682341,3682434-3682511,
3682770-3682866,3682944-3683029,3683310-3683381,
3683451-3683520,3683988-3684110,3684212-3684370,
3684443-3684730,3685652-3685725,3686107-3686344
Length = 470
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 288 PCYKQPKIPESYAPRRCYIKPSAPVEGCTTYKLSYLPVDGCKNLR 422
P +QP++ +YA RR SA + G T+ + + +GC+ +R
Sbjct: 43 PRKQQPQV--AYALRRASATSSAHLHGATSRSFTGVATEGCEQIR 85
>08_01_0070 + 490655-493165
Length = 836
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +3
Query: 408 CKNLRGEVKKPSPNIVPSCEPMEGC---TVQKLSYLPN 512
C++L G V P+P P P+ GC TV++LS L N
Sbjct: 442 CRDLEGAVIMPAPEASPPPPPL-GCEEFTVKELSRLTN 478
>04_04_1193 +
31634043-31634349,31634685-31634847,31635048-31636622,
31636653-31637541,31639401-31641266
Length = 1599
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = -1
Query: 624 YTRLGHVVVSLCGDVLHGDPGPTCRGGRAGSTASRTPGSVG 502
Y RL H V GD HGDP + G A T G VG
Sbjct: 92 YHRLQHQVQR--GDAWHGDPDESADGHGAEQTGRPRRGKVG 130
>04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628
Length = 132
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 503 PTEPGVRDA-VDPALPPRHVGPGS--PCRTSPHNDTTT 607
P++P +R DP P RH GP S RT ND T+
Sbjct: 22 PSQPALRSLNQDPPKPARHTGPRSHIAVRTCHVNDETS 59
>03_06_0555 -
34693067-34693196,34693450-34693688,34693956-34694033,
34694057-34694131,34694667-34694831,34695101-34695151,
34695250-34695300,34695462-34695533,34695736-34695948,
34696064-34696214,34696376-34696490,34696665-34696748,
34696841-34696964,34697064-34697145,34697238-34697299,
34697787-34697840,34697944-34698147
Length = 649
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/73 (24%), Positives = 30/73 (41%)
Frame = +2
Query: 191 QVGSSRRKAH*RRHETELPMPILLLWETAHC*AVLQATKNPRVVRAETMLHKTISPRRGM 370
++ SR+K R + E + +L WE C V ++ V A + S G
Sbjct: 69 EMAESRKKKRKRNYSLEKELTVL--WEKMRCHNVSSTERSKLVSEALRKMDGKYSEIAGS 126
Query: 371 HDLQAVVSTCRRM 409
H V+ TC ++
Sbjct: 127 HVTARVLQTCVKL 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,515,153
Number of Sequences: 37544
Number of extensions: 548460
Number of successful extensions: 1693
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1693
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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