Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23d15
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   3.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +3

Query: 564 QGPHAE-HHHTTTRLRAQAE 620
           Q PH + HHH +T  +AQA+
Sbjct: 808 QPPHQQLHHHQSTHPQAQAQ 827


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 595 VVW*CSAWGPWPHMSWWQ 542
           +VW CS+   +P + WW+
Sbjct: 169 IVWICSSAISFPAIVWWR 186


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 14/61 (22%), Positives = 23/61 (37%)
 Frame = +3

Query: 441 SPNIVPSCEPMEGCTVQKLSYLPNPVCVTQSIRPCHHDMWGQGPHAEHHHTTTRLRAQAE 620
           +P +  SC+        + S L  P          HH M  Q PH +      + +AQ +
Sbjct: 134 TPIVYASCKLQAAAVDHQGSVLDGPDSPPLVESQMHHQMHTQHPHMQPQQGQHQSQAQQQ 193

Query: 621 Y 623
           +
Sbjct: 194 H 194


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = -3

Query: 241 FGLMSPSMGFPSRRPDLIPAAGHGRHSG 158
           + +  P+     ++P+L+ A   G H+G
Sbjct: 104 YNVAVPTKSILEKKPELVDATDPGEHNG 131


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 570 PHAEHHHTTTRLR 608
           PH  HHH T  L+
Sbjct: 350 PHHHHHHQTQSLQ 362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,042
Number of Sequences: 438
Number of extensions: 5334
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)