Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23d10
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.7  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   4.7  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   4.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.3  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 467 LCHATNFIV*VFVGRRNVKLMSRKGLRCADVCIVSSDALQALKMA 333
           L ++ N +   F+G     L+S +     D C+++SDAL+ +  A
Sbjct: 420 LVNSVNCLRESFIGTLQRCLLSLEKTYERDTCLLASDALKQILSA 464


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 467 LCHATNFIV*VFVGRRNVKLMSRKGLRCADVCIVSSDALQALKMA 333
           L ++ N +   F+G     L+S +     D C+++SDAL+ +  A
Sbjct: 458 LVNSVNCLRESFIGTLQRCLLSLEKTYERDTCLLASDALKQILSA 502


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 333 KPTMEYRKKFRSY*GISATRTETPTVKKQNYLHSFQNSF 217
           K   EYRK   +    S  RTE  T K+   + S  N++
Sbjct: 51  KNEREYRKYRETSKERSQDRTERETSKEPKIISSLSNNY 89


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 333 KPTMEYRKKFRSY*GISATRTETPTVKKQNYLHSFQNSF 217
           K   EYRK   +    S  RTE  T K+   + S  N++
Sbjct: 51  KNEREYRKYRETSKERSQDRTERETSKEPKIISSLSNNY 89


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -3

Query: 536 FVMHALISCMQISFVPCAIFW 474
           + ++ +I CM ISF+   +F+
Sbjct: 243 YTVNLIIPCMGISFLTVLVFY 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,326
Number of Sequences: 438
Number of extensions: 3407
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)