Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23d09
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0138 + 23067885-23068245,23068393-23068634                       33   0.15 
11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733     29   1.8  
03_01_0277 - 2127874-2128026,2128134-2129785,2133121-2133172           29   2.4  
06_03_1330 - 29375494-29376912                                         28   4.2  
12_01_0620 + 5109756-5109758,5110016-5110255,5110264-5110653,511...    28   5.6  
07_03_1589 + 27948546-27948548,27948890-27948958,27949235-279493...    27   7.4  
02_02_0030 - 6207784-6208154,6208286-6211310                           27   7.4  
02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608...    27   7.4  
02_01_0061 + 442288-442411,442445-445498,445630-446000                 27   7.4  

>04_04_0138 + 23067885-23068245,23068393-23068634
          Length = 200

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 445 PNEGFP*SHPKLRADCSQGPLALTKRALQQSTPGPRRSVQTPGLAS 308
           P    P S P   A  +  P+ +T+   QQ TP P+ S QTP  +S
Sbjct: 131 PPVSVPRSTPNSTAPSTPTPVTVTRAPPQQMTPSPKTSSQTPEYSS 176


>11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733
          Length = 329

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 6   NIFFYFTTECF*IIYNGFFKSIF 74
           N+  YF T+ F   + G+FKSIF
Sbjct: 94  NVIRYFPTQAFNFAFKGYFKSIF 116


>03_01_0277 - 2127874-2128026,2128134-2129785,2133121-2133172
          Length = 618

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 442 WAVGAGVRVLQNRGCG 489
           W +G  +RVLQN GCG
Sbjct: 533 WDIGCPIRVLQNDGCG 548


>06_03_1330 - 29375494-29376912
          Length = 472

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 318 PGVCTDRRGPGVLCCSARFVRAKGPWL 398
           PGVCT  +       +ARF  A+ PWL
Sbjct: 40  PGVCTAWQSADAASATARFRAAQPPWL 66


>12_01_0620 +
           5109756-5109758,5110016-5110255,5110264-5110653,
           5110723-5110995
          Length = 301

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 253 DQKSGGKILQHLNELSERMKLGQAFVLTDVVPEYSAVALASLGPKDPGYN 402
           D     +I +H  E+  +MK  +A+ L DVV E     LA  G   P  N
Sbjct: 11  DDAEAREIERHYKEVKRKMKTRKAYNLNDVVFEGYRSLLAMHGRAKPDEN 60


>07_03_1589 +
           27948546-27948548,27948890-27948958,27949235-27949335,
           27949460-27950173,27951172-27951333,27951669-27952458
          Length = 612

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +1

Query: 301 ERMKLGQAFVLTDVVPEYSAVALASLGPKDPGYNQLEALDETRENLRWAVGAGVRV 468
           E +K G   ++ DV  E    A A LGP D  Y   +  DE +  +  AV   VR+
Sbjct: 372 EFIKNGAKVIIADVQDELGHSAAAKLGP-DASYTHCDVTDEAQ--VEAAVDLAVRL 424


>02_02_0030 - 6207784-6208154,6208286-6211310
          Length = 1131

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +1

Query: 331 LTDVVPEYSAVALASLGPKDPGYNQLEALD 420
           LT +VP + +  L +L   D GYNQLEA D
Sbjct: 427 LTGIVPSFGS--LPNLQDLDLGYNQLEAGD 454


>02_02_0011 +
           6083431-6085541,6086659-6086779,6087188-6087247,
           6087354-6088391,6089733-6089925,6090326-6090375,
           6090470-6090744,6091114-6091180,6091189-6091278,
           6091301-6091381,6091435-6091593
          Length = 1414

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -1

Query: 451 QQPNEGFP*SHPKLRADCSQGPLALTKRALQQSTPGPRRSV 329
           ++PN     +HP  R D S+ P  L K  +  STPGPR S+
Sbjct: 825 RRPNVPRMPAHP--RHDGSRRPSILKKPQVTGSTPGPRPSL 863


>02_01_0061 + 442288-442411,442445-445498,445630-446000
          Length = 1182

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +1

Query: 331 LTDVVPEYSAVALASLGPKDPGYNQLEALD 420
           LT +VP + +  L +L   D GYNQLEA D
Sbjct: 478 LTGIVPSFGS--LPNLHDLDLGYNQLEAGD 505


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,018,675
Number of Sequences: 37544
Number of extensions: 227931
Number of successful extensions: 627
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)