Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23d06
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   2.9  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    27   2.9  
SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyce...    27   2.9  
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    26   5.0  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    26   5.0  
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    25   8.8  

>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 463 PNTSKMSEKDQKELVKKRASLKGRLTTFRKYIEELSARKAQREKIS 600
           PN++K S++  KE    + S KG+ T   K  +E   +K++  K+S
Sbjct: 503 PNSTKESKQAVKEETSVKNSPKGKNTKNGKAEKEKPGKKSKAPKLS 548


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 144  ISARWTM*RTVSYLDIYICEE 82
            +S RW   R++  +D YIC+E
Sbjct: 1473 LSKRWRSMRSIQKVDFYICDE 1493


>SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 189

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +1

Query: 478 MSEKDQKELVK--KRASLKGRLTTFRKYIEELSARKAQREK 594
           +   +QK+L++  K  S++G      KYIE+   R+AQ+EK
Sbjct: 135 LKRNEQKKLIQMDKYKSMEGT-KALDKYIEKKRRRRAQKEK 174


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 30  QP*KLHHNFILFYCKN-LPPHKYKYL 104
           QP  +H + + F  K  +PPHK++YL
Sbjct: 335 QPTPMHSSEVSFPWKTAIPPHKHRYL 360


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 81  PPHKYKYLNKKPSATWSIEP 140
           P +++KYL +KP  ++ +EP
Sbjct: 556 PYYEFKYLKRKPLGSFELEP 575


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 249 NMININNLNKKQSNGLHITNLS*ISNLDHFPYFLGIS 139
           NMI +NNL   +   +   NL+ + NL    +  G+S
Sbjct: 101 NMIRMNNLATPELTSVGSLNLAVLPNLQELQFNAGLS 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,357
Number of Sequences: 5004
Number of extensions: 40902
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)