Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23d06
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.       28   4.6  
AL110485-8|CAB60356.1|  434|Caenorhabditis elegans Hypothetical ...    28   4.6  
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.      28   6.1  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    28   6.1  

>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical
           protein T10G3.5b protein.
          Length = 1203

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +1

Query: 517 ASLKGRLTTFRKYIEELSARKAQREKISN 603
           + LKG+LT    +IEEL   K Q EK+SN
Sbjct: 684 SELKGKLTESNSFIEEL---KVQVEKVSN 709


>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical
           protein T10G3.5a protein.
          Length = 1205

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +1

Query: 517 ASLKGRLTTFRKYIEELSARKAQREKISN 603
           + LKG+LT    +IEEL   K Q EK+SN
Sbjct: 686 SELKGKLTESNSFIEEL---KVQVEKVSN 711


>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
          Length = 1205

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +1

Query: 517 ASLKGRLTTFRKYIEELSARKAQREKISN 603
           + LKG+LT    +IEEL   K Q EK+SN
Sbjct: 686 SELKGKLTESNSFIEEL---KVQVEKVSN 711


>AL110485-8|CAB60356.1|  434|Caenorhabditis elegans Hypothetical
           protein Y46G5A.13 protein.
          Length = 434

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 102 LNKKPSATWSIEPRYPGNKGSDP 170
           L K+   TW+ EPR PG   S P
Sbjct: 104 LEKEMHVTWAFEPREPGENRSKP 126


>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
          Length = 1751

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +1

Query: 463  PNTSKMSEKDQKELVKKRASLKGRLTTFRKYIEELSARKAQREKISN 603
            P+T K    +  +L +KR S++ R+  +  +  +++A+  Q EK  N
Sbjct: 1323 PDTKKALSAELADLHRKRDSMEARINKYLTHSAKINAKLTQFEKWLN 1369


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +1

Query: 463  PNTSKMSEKDQKELVKKRASLKGRLTTFRKYIEELSARKAQREKISN 603
            P+T K    +  +L +KR S++ R+  +  +  +++A+  Q EK  N
Sbjct: 1323 PDTKKALSAELADLHRKRDSMEARINKYLTHSAKINAKLTQFEKWLN 1369


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,010,578
Number of Sequences: 27780
Number of extensions: 221215
Number of successful extensions: 600
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)