Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23d05
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical ...    28   4.3  
Z70205-10|CAA94122.2|  887|Caenorhabditis elegans Hypothetical p...    27   10.0 
Z68003-5|CAA91979.2|  887|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical pr...    27   10.0 
L07144-9|AAK21441.1|  737|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical
           protein F13C5.1 protein.
          Length = 437

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -2

Query: 101 NKHNYTHIVLVFMQYFFHQTKILFTQVSKI 12
           ++H +TH +LVF+ +FF    ++ + + KI
Sbjct: 50  HRHTHTHTILVFVVHFFISIHLVLSLLLKI 79


>Z70205-10|CAA94122.2|  887|Caenorhabditis elegans Hypothetical
           protein E02H4.3a protein.
          Length = 887

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 305 RTLNRVRPPFSARCGLGNVSCRAARAVTATDMKQGPALVQSPAP 436
           +T+N V   FS + G GN +     A T T  K+ PA  Q P P
Sbjct: 430 KTVNAVAAAFSTQAGSGNATTVDDPASTTTS-KENPA-AQPPKP 471


>Z68003-5|CAA91979.2|  887|Caenorhabditis elegans Hypothetical
           protein E02H4.3a protein.
          Length = 887

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 305 RTLNRVRPPFSARCGLGNVSCRAARAVTATDMKQGPALVQSPAP 436
           +T+N V   FS + G GN +     A T T  K+ PA  Q P P
Sbjct: 430 KTVNAVAAAFSTQAGSGNATTVDDPASTTTS-KENPA-AQPPKP 471


>U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical
           protein F18C5.3 protein.
          Length = 1490

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +2

Query: 347 GLGNVSCRAARAVTATDMKQGPALVQSPAPVPLVLAEC*PVYTEHAVQRA 496
           G     C  A+   A +M Q    + SPA + +VLA    V  EH   +A
Sbjct: 733 GAVKAECPEAKGNRAPEMMQHLGRIVSPAGIQMVLAPFRDVVNEHPSAKA 782


>L07144-9|AAK21441.1|  737|Caenorhabditis elegans Hypothetical
           protein R05D3.2 protein.
          Length = 737

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 316 QSSASILREVWTGKCQLSCCESRDGNGHE 402
           Q +AS+ R++W   CQL C   R+ +  E
Sbjct: 697 QLTASMRRQIWKWICQLRCGIRRESDADE 725


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,956,905
Number of Sequences: 27780
Number of extensions: 293738
Number of successful extensions: 653
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)