Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23d05
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.42 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   6.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 101  LSLHADKHSVRITLSAYRSSQITQK 175
            L +HA  HS +ITL+A  ++ +T K
Sbjct: 1361 LIVHAPPHSPQITLTATTTNSLTMK 1385


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 146 AYRSSQITQKASRNLFISFHLS 211
           ++    I ++A  NL++ FHL+
Sbjct: 246 SFAHQSINKEARSNLYLPFHLT 267


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 146 AYRSSQITQKASRNLFISFHLS 211
           ++    I ++A  NL++ FHL+
Sbjct: 241 SFAHQSINKEARSNLYLPFHLT 262


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 591 KHPLNVHKCF 562
           +H L++HKCF
Sbjct: 553 RHNLSLHKCF 562


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,777
Number of Sequences: 438
Number of extensions: 3388
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)