Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23d04
         (625 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to endonuclea...    38   0.15 
UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to endonuclea...    37   0.34 
UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to endonuclea...    36   1.0  
UniRef50_UPI0000F1F549 Cluster: PREDICTED: hypothetical protein,...    34   3.2  
UniRef50_UPI0000E25BD1 Cluster: PREDICTED: similar to basic prol...    32   9.7  

>UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to
            endonuclease-reverse transcriptase; n=5;
            Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
            endonuclease-reverse transcriptase - Strongylocentrotus
            purpuratus
          Length = 1030

 Score = 38.3 bits (85), Expect = 0.15
 Identities = 18/31 (58%), Positives = 20/31 (64%)
 Frame = +2

Query: 305  PTRPSVVFVVQGSVDGTRPRGRPPMRWNDQI 397
            PTR   +  V+G V G RPRGRPP RW D I
Sbjct: 958  PTRYPKI-AVEGKVTGNRPRGRPPKRWLDCI 987


>UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to
           endonuclease-reverse transcriptase, partial; n=7;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           endonuclease-reverse transcriptase, partial -
           Strongylocentrotus purpuratus
          Length = 787

 Score = 37.1 bits (82), Expect = 0.34
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 335 QGSVDGTRPRGRPPMRWNDQIK 400
           Q   +G RPRGRPP RW DQ++
Sbjct: 467 QNDFNGRRPRGRPPKRWKDQVQ 488


>UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to
           endonuclease-reverse transcriptase; n=2;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           endonuclease-reverse transcriptase - Strongylocentrotus
           purpuratus
          Length = 958

 Score = 35.5 bits (78), Expect = 1.0
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 278 FSRVEPGSSPTRPSVVFVVQGSVDGTRPRGRPPMRWNDQIK 400
           F  +   +S   P ++  + G++ G RPRGRP  RW D IK
Sbjct: 863 FGHINRMNSKRYPHIL--LNGNIHGKRPRGRPAKRWTDCIK 901


>UniRef50_UPI0000F1F549 Cluster: PREDICTED: hypothetical protein,
           partial; n=1; Danio rerio|Rep: PREDICTED: hypothetical
           protein, partial - Danio rerio
          Length = 731

 Score = 33.9 bits (74), Expect = 3.2
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = -3

Query: 302 SFRAQLERITITSPLIIYTSSPSKSTVSLNL 210
           SF + +  ITITS  + +TSSP  ST SLN+
Sbjct: 378 SFSSSISSITITSKKVTHTSSPLNSTNSLNI 408


>UniRef50_UPI0000E25BD1 Cluster: PREDICTED: similar to basic
           proline-rich protein; n=1; Pan troglodytes|Rep:
           PREDICTED: similar to basic proline-rich protein - Pan
           troglodytes
          Length = 442

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 28/78 (35%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = -2

Query: 510 SSCSVGRGRLDASHDVAPSLPARGHSTAL--I*GTSHCSLIWSFHRIGGLPRGLVPSTLP 337
           S+CS GRG L+ S  +    P  GH TA   + G   CS   +       P+  V  TLP
Sbjct: 170 STCSPGRGALEGSGALGSPSPGVGHPTARTNLGGPGPCSPRTAPRSRRNPPKPWV-QTLP 228

Query: 336 CTTNTTLGRVGELPGSTR 283
                T GR G   G TR
Sbjct: 229 GDLGGT-GRAGAAGGGTR 245


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,133,757
Number of Sequences: 1657284
Number of extensions: 11198129
Number of successful extensions: 27177
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27168
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)