Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23d04
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    26   3.8  
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|...    26   5.1  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   5.1  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    25   6.7  
SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ...    25   8.9  

>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 260 LIIYTSSPSKSTVSLNLPPEFMEV 189
           ++   SSP KS V   LPPE  E+
Sbjct: 354 MVFCASSPDKSVVEFVLPPENAEI 377


>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 201

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +1

Query: 331 CTGKR*WYKTTREATNAVERPN*TAVGGPLNECSRMASSRER 456
           C G   WYK  R +   VER    A+   + E + +    E+
Sbjct: 79  CVGSEEWYKAKRLSHKEVERRRREAISEGIKELANIVPGCEK 120


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
 Frame = -3

Query: 470  TMSRHLSLLEAILLHSFRGPPTAV*FGRSTALVASRVVLYHQRFPVQRILRSDG*VSFRA 291
            T++    +  + +L+S     ++     ST + +S V+          IL S   V+  +
Sbjct: 3305 TLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTAITSSSILNSSTPVTSSS 3364

Query: 290  QLERIT-ITSPLIIYTSSPSKSTVSLN 213
             L   T ITS  ++ +S+P  S+ +LN
Sbjct: 3365 VLNSSTPITSSTVVNSSTPITSSTALN 3391


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 222 NSALARA-RRVYNQRASDSNSLELSPEAHLPVR 317
           NSA+  A RR Y+  +S S+  +   ++HLP R
Sbjct: 271 NSAVIEAARRTYSSISSSSSPFKKKTQSHLPNR 303


>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
           complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 218

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 288 LSPEAHLPVRA*YSLYREALMVQDHAGGHQCGGTTKLNCSGR 413
           ++P + LP+++ YS +RE +  +     ++ GG       GR
Sbjct: 81  INPASSLPIKSDYSFFREGVRPEWEDVHNKTGGKWAFQNKGR 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,022
Number of Sequences: 5004
Number of extensions: 46793
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)