Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23d04
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    34   0.095
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    30   1.2  
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    30   1.2  
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U28941-6|AAC71101.2| 1788|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AY314774-1|AAQ84881.1| 1757|Caenorhabditis elegans methuselah-li...    28   4.7  

>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 33.9 bits (74), Expect = 0.095
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 347 DGTRPRGRPPMRWNDQIK 400
           D  RP GRPPMRWND ++
Sbjct: 148 DEKRPVGRPPMRWNDSLR 165


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 356 RPRGRPPMRWNDQIK 400
           RP GRPPMRW D ++
Sbjct: 840 RPVGRPPMRWTDSLR 854


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 356  RPRGRPPMRWNDQIK 400
            RP GRPPMRW D ++
Sbjct: 1015 RPVGRPPMRWTDSLR 1029


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 356 RPRGRPPMRWNDQIK 400
           RP GRPPMRW D ++
Sbjct: 754 RPVGRPPMRWTDSLR 768


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 356 RPRGRPPMRWNDQIK 400
           RP GRPPMRW D ++
Sbjct: 366 RPVGRPPMRWTDSLR 380


>Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical
           protein C07A9.10 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 356 RPRGRPPMRWNDQIK 400
           RP G+PPMRW D ++
Sbjct: 15  RPVGKPPMRWTDSLR 29


>U28941-6|AAC71101.2| 1788|Caenorhabditis elegans Hypothetical protein
            F31D5.5 protein.
          Length = 1788

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -3

Query: 275  TITSPLIIYTSSPSKSTVSLNLPPE--FMEVIRQYFL 171
            TITS  +  TSSPS STV+   PP     + +R +FL
Sbjct: 932  TITSTTVT-TSSPSTSTVTTTTPPSTTTQDDVRNHFL 967


>AY314774-1|AAQ84881.1| 1757|Caenorhabditis elegans methuselah-like
            protein MTH-1 protein.
          Length = 1757

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -3

Query: 275  TITSPLIIYTSSPSKSTVSLNLPPE--FMEVIRQYFL 171
            TITS  +  TSSPS STV+   PP     + +R +FL
Sbjct: 901  TITSTTVT-TSSPSTSTVTTTTPPSTTTQDDVRNHFL 936


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,296,721
Number of Sequences: 27780
Number of extensions: 266525
Number of successful extensions: 596
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)