Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23d04
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              24   1.0  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.2  

>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +1

Query: 184 RMTSMNSGGRFNETVLLLGLDVYIIKGLVIVILSS*A----RKLTYPSERSIRCTGKR*W 351
           +  + + GG FNE V+    ++Y+ +  V  +++  +      +   S + I+C  K   
Sbjct: 69  KFNAYDDGGNFNEVVVREIAEIYLDENEVNKLITECSAISDADIHLKSSKLIKCFAK--- 125

Query: 352 YKTTREATN 378
           YKT +E  N
Sbjct: 126 YKTLKEIMN 134


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -3

Query: 251 YTSSPSKSTVSLNLPPEFMEVIRQYF 174
           Y  S  +  +  N+PPE+ +++R ++
Sbjct: 21  YVPSMREKFLGWNVPPEYSDLVRPHW 46


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -3

Query: 296 RAQLERITITSPLIIYTSSPSKSTVSLNLPPEFMEVIRQYF 174
           +AQ  +  +TSPL     +  +   S NLP      +R  F
Sbjct: 228 QAQQHQGVVTSPLSQQQQAAPQGAASANLPSPLYPWMRSQF 268


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,499
Number of Sequences: 438
Number of extensions: 3159
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)