Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23d02
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0722 - 35751490-35754357 30 1.3
02_03_0146 + 15720790-15721194,15721350-15721446,15721663-157219... 30 1.7
02_02_0238 + 8163922-8164362,8165008-8165118,8165205-8165249,816... 30 1.7
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 29 3.0
11_01_0635 - 5091381-5091562,5092800-5092866,5093079-5093960 28 5.3
04_04_1365 - 32967604-32968367,32969097-32969221,32969583-32969632 28 5.3
03_05_0354 + 23411485-23411802,23411886-23412176,23414610-234146... 28 5.3
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 28 5.3
01_07_0320 + 42708082-42708324,42708359-42708409,42708987-427091... 28 7.0
01_06_1183 - 35176780-35177266,35179631-35181093 28 7.0
>03_06_0722 - 35751490-35754357
Length = 955
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 502 KDSNEDEDKVESVDETYENPYIVDKSQLEEIERKLEPL 615
++ ++DED+ E +E E P I D++ +E I K + L
Sbjct: 207 QNEDKDEDESEEEEEEEEGPVIPDRATIEAIRAKRQQL 244
>02_03_0146 +
15720790-15721194,15721350-15721446,15721663-15721928,
15721997-15722437
Length = 402
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Frame = +1
Query: 379 KMMTDEEKSKIAKLLHD----VAVKENQLPERCSGLVKDIREKFGKDSNEDEDKVESVDE 546
+++ E+K K +++ D +A++E + E+ L + + + G+ SN++ VES DE
Sbjct: 283 ELLAKEDKKKAIQIMQDREIAMAIQEKEEKEQHKVLKRGLETR-GESSNKEIMAVESKDE 341
Query: 547 TYENPYIVDKSQLEEIERKLE 609
+ + Q+ I+ +E
Sbjct: 342 SLPMIKVGQNQQMRSIKEGME 362
>02_02_0238 +
8163922-8164362,8165008-8165118,8165205-8165249,
8166066-8166138,8166215-8166327,8166430-8166489,
8167287-8167334,8167422-8167490,8167618-8167679,
8167771-8167828
Length = 359
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 499 GKDSNEDEDKVESVDETYENPYIVDKSQLEEIERKLEP 612
GK+ E+ KVE +E E Y D +LEE+ KL P
Sbjct: 37 GKEEEEEAAKVEEEEEE-EREYKSDMRKLEELMSKLNP 73
>05_05_0348 +
24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/75 (26%), Positives = 39/75 (52%)
Frame = +1
Query: 388 TDEEKSKIAKLLHDVAVKENQLPERCSGLVKDIREKFGKDSNEDEDKVESVDETYENPYI 567
T+++ SKI + +V + +P+ + K ++EKF NE+E +E + E
Sbjct: 417 TEKDTSKIDESTKEVEESSSLIPQLEEEIPK-LQEKF----NEEEKVLEQIKENSREETE 471
Query: 568 VDKSQLEEIERKLEP 612
+S+L ++ +LEP
Sbjct: 472 RLRSKLTQVRSELEP 486
>11_01_0635 - 5091381-5091562,5092800-5092866,5093079-5093960
Length = 376
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +1
Query: 376 SKMMTDEEKSKIAKLLHDVAVKENQLPERCSGLVKDIREKFGKDSNEDEDKVESVDETYE 555
S T +S + L + KE ++ E ++ E +DS+EDED+ E ++Y
Sbjct: 300 SSTCTGSRESHSSDLFQVFSFKEIEILEGYDNDQDEVEEDEDEDSHEDEDENE---DSYG 356
Query: 556 NPY 564
+PY
Sbjct: 357 DPY 359
>04_04_1365 - 32967604-32968367,32969097-32969221,32969583-32969632
Length = 312
Score = 28.3 bits (60), Expect = 5.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 342 YKIYCRLGNHWHRCSHSQINLV 277
Y Y RL NHW++C + + V
Sbjct: 260 YVTYLRLNNHWYKCDDAWVTRV 281
>03_05_0354 +
23411485-23411802,23411886-23412176,23414610-23414675,
23415186-23415645,23415963-23416189,23416362-23416649,
23416955-23416966
Length = 553
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 457 ERCSGLVKDIRE--KFGKDSNEDEDKVESVDETYENPY 564
ER +D RE K G D +EDED+ E VD+ E+ Y
Sbjct: 16 ERACLAEQDHREEKKEGDDEDEDEDEDEDVDKDGEDRY 53
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 28.3 bits (60), Expect = 5.3
Identities = 22/95 (23%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Frame = +1
Query: 340 INNTKPDI--IEQFSKMMTDEEKS---KIAKLLHDVAVKENQLPERCSGLVKDIREKFGK 504
+ N + +I +E+ S+M+ +++K+ ++++L AV +Q G +KD+ ++ K
Sbjct: 2257 LENARMEIHNLEKHSEMLLNQKKNLETQVSELKDMEAVAHDQ-----HGRIKDLSDELSK 2311
Query: 505 DSNEDEDKVESVDETYENPYIVDKSQLEEIERKLE 609
E E ++++DE E V +++ ++E+ L+
Sbjct: 2312 KDQEIEGLMQALDEE-ERELEVLENKSNDLEKMLQ 2345
>01_07_0320 +
42708082-42708324,42708359-42708409,42708987-42709122,
42709226-42709275,42709978-42710066,42710398-42710434,
42710435-42710471,42710588-42710733,42711099-42711241,
42711735-42711768,42711962-42712064,42712236-42712381,
42712982-42713323,42713416-42713656,42713733-42713788,
42713852-42713920
Length = 640
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 141 NVYREFLFVLPSTCLHQNEFISWCFKFIKPTT 236
N+Y +FL + STC ++ + W F I+ TT
Sbjct: 446 NIYGDFLQEITSTCCLEDVEMGWAFCPIRVTT 477
>01_06_1183 - 35176780-35177266,35179631-35181093
Length = 649
Score = 27.9 bits (59), Expect = 7.0
Identities = 20/75 (26%), Positives = 37/75 (49%)
Frame = +1
Query: 388 TDEEKSKIAKLLHDVAVKENQLPERCSGLVKDIREKFGKDSNEDEDKVESVDETYENPYI 567
+DE ++++ +L HD+A + LP GL D+ + S + + E+ E
Sbjct: 118 SDEMEAELRELNHDLATLLDLLPVVELGLADDVLDVLALASRQCR-RCSPAPESEEALKA 176
Query: 568 VDKSQLEEIERKLEP 612
S ++EIER++ P
Sbjct: 177 SVLSLIQEIEREIVP 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,205,701
Number of Sequences: 37544
Number of extensions: 308070
Number of successful extensions: 814
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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