Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23c22
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr...    28   1.1  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   7.9  
SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   7.9  

>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 363 IYLLFCKLIQN*FVQT*NLKKYPIYNLINFSQTGRVVFFYQYFGNEQVDV 512
           +YL +C  ++       N K++ I N   F ++ R    YQY G  QV V
Sbjct: 88  LYLSYCGKLKKMSFLLGNTKEFAIPNNGYFVESSRASILYQYQGGVQVIV 137


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1098

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 479  KKNNASCLAEIYEIIYWIFFKIL 411
            +K   S LAE+ +  YWI+  +L
Sbjct: 981  EKEQQSLLAELDDFFYWIYVNLL 1003


>SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 122

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 184 MSPRHSQSRNRYRQLLQNVPPDEVVYGSPLSRSRYRRNE 68
           MSP+ S     ++ LLQ+   +E++        +YR N+
Sbjct: 1   MSPKESIELQEFQSLLQDEAYEELINKKTYEAIKYRSND 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,828,393
Number of Sequences: 5004
Number of extensions: 31727
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)