Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23c22
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0711 - 6275052-6276401                                           29   3.5  
03_03_0042 + 14009649-14009866,14011342-14011419,14011791-140119...    28   4.6  
12_01_0518 - 4093206-4094955,4095357-4095810,4095966-4096236,409...    27   8.1  
08_02_0707 - 20212190-20214592                                         27   8.1  

>08_01_0711 - 6275052-6276401
          Length = 449

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = -3

Query: 539 VKISYDNNLDINLFVSKILIK----KNNASCLA 453
           V +S+D  LDI LF S + IK    K  A CLA
Sbjct: 378 VTLSFDGGLDIELFTSALFIKTETTKGPAVCLA 410


>03_03_0042 +
           14009649-14009866,14011342-14011419,14011791-14011955,
           14012071-14012138,14012219-14012258,14013579-14013690,
           14013859-14013942
          Length = 254

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = -1

Query: 193 YHHMSPRHSQSRNRYRQLLQNVPPDEVVYGSPLSRSRYRRNEHSQNESQCADRRRQA 23
           YH  SP  S +R  YR    +  P E +      +  +R N  S +  +     RQA
Sbjct: 175 YHSYSPSPSPARRDYRDHRDDYSPGESLSPHGQDKRHHRSNGRSASPDELERHARQA 231


>12_01_0518 -
           4093206-4094955,4095357-4095810,4095966-4096236,
           4096308-4096628
          Length = 931

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -1

Query: 199 HSYHHMSPRHSQSRNRYRQLLQNVPPDEVVYGSPLSRSRYRRNEHSQNESQC 44
           +S  H+ P  S S    +   + VPP   V      R  YRR+   Q  +QC
Sbjct: 143 NSRSHLRPSSSSSATIAKYCAKRVPPSCSVLAVGNGRVVYRRDAAQQQLNQC 194


>08_02_0707 - 20212190-20214592
          Length = 800

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -1

Query: 199 HSYHHMSPRHSQSRNRYRQLLQNVPPDEVVYGSPLSRSRYRRNE-HSQN 56
           H +H  S  H QS +   Q + N+  D  +   PL+      +E HS N
Sbjct: 588 HHHHDHSEHHQQSGDHAHQDISNISSDPAILEIPLNSIHTHCSEAHSCN 636


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,500,450
Number of Sequences: 37544
Number of extensions: 185615
Number of successful extensions: 373
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)