Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23c21
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    29   0.57 
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    29   0.76 
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    27   3.1  
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    26   5.3  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    25   7.1  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    25   7.1  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    25   7.1  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   7.1  

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +2

Query: 158  PVDDLTEQAKIDNFANVLRESIARDREEKKRKFNFDFENEVPLD---GVYEW 304
            P DDL + A++  F N++ + + +D+E  +R         +PL+   G  EW
Sbjct: 2084 PKDDLRKDARLMEFNNLICKILRKDQEANRRNLCIRTYVVIPLNEECGFIEW 2135


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +2

Query: 236 EEKKRKFNFDFENEVPLDGVYEWYRTD-GVNDW-IAVKKDPCTDVIKEKPDALKQLENES 409
           EE + KF F+FE  V LD  Y    TD  +++W I +  +PC +  +E   ++  L    
Sbjct: 325 EELRLKFRFEFEKLVLLD--YLMRNTDRNLDNWMIKICYEPCDN--EEYYKSINLLSTNL 380

Query: 410 TPRTNKDEKMPLL 448
           TP  + +   P +
Sbjct: 381 TPNMSANSVDPAI 393


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 356 TDVIKEKPDALKQLENESTPR 418
           TD+++ KP+AL  LEN   P+
Sbjct: 522 TDLLQNKPEALLDLENRFLPK 542


>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 365 IKEKPDALKQLENESTPRTNKDEKMPLLRKRRKSL 469
           ++EK D LKQ ENE   RT   E    L K++  L
Sbjct: 412 VQEKEDRLKQSENEL--RTRHREMKAALEKQKADL 444


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 22/85 (25%), Positives = 33/85 (38%)
 Frame = +2

Query: 167 DLTEQAKIDNFANVLRESIARDREEKKRKFNFDFENEVPLDGVYEWYRTDGVNDWIAVKK 346
           D  ++AKI     + RESI  +REE+  K     E  + L      Y         + + 
Sbjct: 82  DEADRAKIMAMTEIERESILFEREEEISKLMERRELAIRLHQQNAQYMAQSTRR--STRD 139

Query: 347 DPCTDVIKEKPDALKQLENESTPRT 421
            P T     K D L +L+     R+
Sbjct: 140 KPLTSAAAGKRDKLTELKKRRQERS 164


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 21/85 (24%), Positives = 35/85 (41%)
 Frame = +2

Query: 212 RESIARDREEKKRKFNFDFENEVPLDGVYEWYRTDGVNDWIAVKKDPCTDVIKEKPDALK 391
           RE    +R+ KK +    + +E+       W++++   D  A K     D  K      K
Sbjct: 665 RELKIAERDLKKGENIMKYGDEIRSRPARTWFQSE--KDKQASKASEAKDK-KSLAKRKK 721

Query: 392 QLENESTPRTNKDEKMPLLRKRRKS 466
           Q+E E  PR  K  K   L  ++ +
Sbjct: 722 QMEKEEVPRAYKKTKNDRLSNKKST 746


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 544 RYVLRICDALIEANLPSHTL 485
           +Y+L++C AL+    PSH L
Sbjct: 330 KYILKLCRALMVYGAPSHRL 349


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 359  DVIKEKPDALKQLENE 406
            D +KEK DAL+QL NE
Sbjct: 1137 DDLKEKSDALEQLTNE 1152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,859
Number of Sequences: 5004
Number of extensions: 46282
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)