Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23c21
(644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0405 - 17336431-17336436,17336572-17336629,17337556-173376... 33 0.26
10_08_0345 - 16985194-16985260,16985407-16985610,16987780-16988093 31 0.59
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 31 0.78
08_01_0125 + 1001397-1001865,1002743-1002810,1003359-1003490,100... 31 1.0
11_06_0386 + 23012139-23012530,23012773-23012955,23013094-230131... 28 7.3
04_03_0961 + 21263735-21263773,21264157-21264279,21266774-212668... 28 7.3
02_01_0194 + 1314181-1314661,1315656-1315723,1315834-1315965,131... 28 7.3
07_03_0041 + 12727924-12728250 27 9.7
03_02_0961 + 12759701-12760054,12760294-12760420,12760719-127611... 27 9.7
>09_04_0405 -
17336431-17336436,17336572-17336629,17337556-17337654,
17337737-17337828
Length = 84
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 179 QAKIDNFANVLRESIARDREEKKRKFNFDFENEVPLDGVYEWYR 310
+ +++ F S+AR K+N+D + P+DG YEW R
Sbjct: 43 EEEVEAFLAAAESSVAR---RFAAKYNYDIVKDAPMDGRYEWVR 83
>10_08_0345 - 16985194-16985260,16985407-16985610,16987780-16988093
Length = 194
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 227 RDREEKKRKFNFDFENEVPLDGVYEWYRTD 316
R R+ K+NFD N+ PL G +EW + D
Sbjct: 165 RQRQAFIDKYNFDPVNDCPLPGRFEWVKLD 194
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 31.1 bits (67), Expect = 0.78
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Frame = +2
Query: 161 VDDL-TEQAKIDNFANVLRESIARDREEKKRKFNFDF-ENEVPLDGVYEWYRTDG-VNDW 331
+DDL E+ ++ N N+ R + A ++E K + E E V E T+G +ND
Sbjct: 402 IDDLIAEKEELMNSMNIERGAAAEEKEMLVSKHSKCLTELEKAQSSVKELESTNGDLNDK 461
Query: 332 IAVKKDPCTDVIKEKPDALKQLENESTPRTNKDEKMPLLRKRRKSLGLVD 481
IAV ++ + E EN + E++ ++ K + L LV+
Sbjct: 462 IAVLQNEKNSLSSELQQLEASFENLGNDLEQELERISIMHKNNEDLELVN 511
>08_01_0125 +
1001397-1001865,1002743-1002810,1003359-1003490,
1003649-1003810,1003973-1004260
Length = 372
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = -3
Query: 498 RLTPLSSTKPRLFLLFLSNGIFSSLLVRGVDSFSNCLRASGFSLMTSVQGSFFTAIQSLT 319
++ S PR + +NG+ S++ +R DS L G + S+ GSF S T
Sbjct: 184 KVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFELLSLSGSFMPTENSGT 243
Query: 318 PS 313
S
Sbjct: 244 RS 245
>11_06_0386 +
23012139-23012530,23012773-23012955,23013094-23013151,
23013828-23013872
Length = 225
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 230 DREEKKRKFNFDFENEVPLDGVYEWYRT 313
+R K+N+D + PL G YEW T
Sbjct: 185 ERRRFAEKYNYDIALDRPLQGRYEWEPT 212
>04_03_0961 +
21263735-21263773,21264157-21264279,21266774-21266847,
21266939-21267095,21267554-21267694,21267739-21267823,
21268810-21268903,21269041-21269239,21269515-21269549,
21270076-21270631,21270722-21270882,21271704-21271718,
21273078-21273330,21273439-21273562,21273688-21273788,
21274870-21274938,21275060-21275191,21275270-21275404,
21275489-21275551,21275636-21275881,21276007-21276285
Length = 1026
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/50 (22%), Positives = 27/50 (54%)
Frame = +2
Query: 359 DVIKEKPDALKQLENESTPRTNKDEKMPLLRKRRKSLGLVDDKGVRRKIS 508
D ++ + L+N+S PR N ++ +++R G +G+R++++
Sbjct: 431 DALQNSTRGVANLQNQSAPRDNNHTELVAVKRRPTLRGGKAKRGMRKQLN 480
>02_01_0194 +
1314181-1314661,1315656-1315723,1315834-1315965,
1317581-1317742,1318288-1318611
Length = 388
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = -3
Query: 498 RLTPLSSTKPRLFLLFLSNGIFSSLLVRGVDSFSNCLRASGFSLMTSVQGSF 343
++ S PR + +NG+ S++ +R D+ + G + S+ GSF
Sbjct: 188 KVISFSQQGPRAICILSANGVISNVTLRQQDTLGGTVTYEGRFELLSLSGSF 239
>07_03_0041 + 12727924-12728250
Length = 108
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 302 WYRTDGVNDWIAVKKDPCTDVIKEKPDALKQLENESTPRTNKDEKMPLL 448
W + D + W+A+ KDP V+++ D L N R N PLL
Sbjct: 15 WRQKDSLFRWVAITKDPLGPVLEQCLDIPTTLPN---LRHNASLNTPLL 60
>03_02_0961 +
12759701-12760054,12760294-12760420,12760719-12761167,
12761369-12761590,12761672-12761980,12762092-12762430,
12762504-12762584,12762661-12762756,12762846-12763220,
12763400-12763531,12763962-12764132
Length = 884
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +1
Query: 214 REHSKGQRRKKEEI*LRFRKRSTSRWSLRMV 306
+EH+ Q K+ E +R + ++TS+W+ R++
Sbjct: 372 KEHAMKQEFKRAEERMRLKHKNTSKWAKRIL 402
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,975,638
Number of Sequences: 37544
Number of extensions: 261199
Number of successful extensions: 724
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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