Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23c21
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50796-3|CAA90667.1|  184|Caenorhabditis elegans Hypothetical pr...    33   0.13 
AF179358-1|AAF13868.1|  184|Caenorhabditis elegans cyclin-depend...    33   0.13 
Z50796-5|CAD45597.1|  259|Caenorhabditis elegans Hypothetical pr...    33   0.23 
AF179359-1|AAF13869.1|  259|Caenorhabditis elegans cyclin-depend...    33   0.23 
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z50796-4|CAA90670.1|  258|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       29   3.7  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    29   3.7  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    29   3.7  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    29   3.7  
Z54282-4|CAA91055.1|   66|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z93393-3|CAB54438.2|  388|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z93393-2|CAB07689.2|  890|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U42838-1|AAB52492.2|  398|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z22178-1|CAA80153.1|  298|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z50796-3|CAA90667.1|  184|Caenorhabditis elegans Hypothetical
           protein T05A6.1 protein.
          Length = 184

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +2

Query: 143 RRCLF--PVDDLTEQAKIDNFANVLRESIARDREEKKRKFNFDFENEVPL 286
           RRCLF  P  +   + +I      L +++ R R+E+ +K+ FDFE E PL
Sbjct: 5   RRCLFGRPTPEQRSRTRI-----WLEDAVKRMRQEESQKWGFDFELETPL 49


>AF179358-1|AAF13868.1|  184|Caenorhabditis elegans cyclin-dependent
           kinase inhibitor protein.
          Length = 184

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +2

Query: 143 RRCLF--PVDDLTEQAKIDNFANVLRESIARDREEKKRKFNFDFENEVPL 286
           RRCLF  P  +   + +I      L +++ R R+E+ +K+ FDFE E PL
Sbjct: 5   RRCLFGRPTPEQRSRTRI-----WLEDAVKRMRQEESQKWGFDFELETPL 49


>Z50796-5|CAD45597.1|  259|Caenorhabditis elegans Hypothetical
           protein T05A6.2b protein.
          Length = 259

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = +2

Query: 146 RCLFPVDDLTEQAKIDNFANVLRESIARDREEKKRKFNFDFENEVPLDGVYEWYRTDGVN 325
           RCLF   D  EQ      +  L  S+    ++  RKFNFDF   VP+ G    Y  + ++
Sbjct: 15  RCLFGKPDPEEQV-----SRQLNSSLEEMYKKDSRKFNFDFSGGVPIVGSRGDYEFESIS 69


>AF179359-1|AAF13869.1|  259|Caenorhabditis elegans cyclin-dependent
           kinase inhibitor protein.
          Length = 259

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = +2

Query: 146 RCLFPVDDLTEQAKIDNFANVLRESIARDREEKKRKFNFDFENEVPLDGVYEWYRTDGVN 325
           RCLF   D  EQ      +  L  S+    ++  RKFNFDF   VP+ G    Y  + ++
Sbjct: 15  RCLFGKPDPEEQV-----SRQLNSSLEEMYKKDSRKFNFDFSGGVPIVGSRGDYEFESIS 69


>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
            F58G4.1 protein.
          Length = 1974

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/95 (23%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
 Frame = +2

Query: 227  RDREEKKRKFNFDFEN-EVPLDGVYEWYRTDGVNDWIAVKKDPCTDVIKEKPDALKQLEN 403
            + +EE+KRK + + EN  +  +      + +   D  A  ++    ++ +K D  KQ+ N
Sbjct: 873  KTQEERKRK-DMEAENARLEAEKQALLIQLEQERDSSAEGEERSAKLLAQKADLEKQMAN 931

Query: 404  ESTPRTNKDEKMPLLRKRRKSLGLVDDKGVRRKIS 508
             +    +++EK   L K++K +   D++G+++ +S
Sbjct: 932  MNDQLCDEEEKNAALTKQKKKIE-QDNEGLKKTVS 965


>Z50796-4|CAA90670.1|  258|Caenorhabditis elegans Hypothetical
           protein T05A6.2a protein.
          Length = 258

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +2

Query: 146 RCLFPVDDLTEQAKIDNFANVLRESIARDREEKKRKFNFDFENEVPLDGVYEWYRTDGVN 325
           RCLF   D  E ++  N +  L E   +D     RKFNFDF   VP+ G    Y  + ++
Sbjct: 15  RCLFGKPDPEEVSRQLNSS--LEEMYKKD----SRKFNFDFSGGVPIVGSRGDYEFESIS 68


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/31 (41%), Positives = 24/31 (77%)
 Frame = -2

Query: 544  RYVLRICDALIEANLPSHTLIINQT*TLPSL 452
            RY +++CD+L++A+L  +  +IN+T T+ SL
Sbjct: 2374 RYHVKLCDSLLDASLLQYD-VINETYTVASL 2403


>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +2

Query: 341  KKDPCTDVIKEKPDALKQLENESTPRTNKDEKMPLLRKRRKSLGLVDDK 487
            KK+   + ++EKP +  + E+  T +T+ + K P   K+ KS   V++K
Sbjct: 1654 KKEKSPEKVEEKPTSPTKKESSPTKKTDDEVKSP--TKKEKSPQTVEEK 1700


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
            protein 89, isoform a protein.
          Length = 6632

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +2

Query: 341  KKDPCTDVIKEKPDALKQLENESTPRTNKDEKMPLLRKRRKSLGLVDDK 487
            KK+   + ++EKP +  + E+  T +T+ + K P   K+ KS   V++K
Sbjct: 1654 KKEKSPEKVEEKPTSPTKKESSPTKKTDDEVKSP--TKKEKSPQTVEEK 1700


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
            protein 89, isoform g protein.
          Length = 7122

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +2

Query: 341  KKDPCTDVIKEKPDALKQLENESTPRTNKDEKMPLLRKRRKSLGLVDDK 487
            KK+   + ++EKP +  + E+  T +T+ + K P   K+ KS   V++K
Sbjct: 1654 KKEKSPEKVEEKPTSPTKKESSPTKKTDDEVKSP--TKKEKSPQTVEEK 1700


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
            protein 89, isoform b protein.
          Length = 8081

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +2

Query: 341  KKDPCTDVIKEKPDALKQLENESTPRTNKDEKMPLLRKRRKSLGLVDDK 487
            KK+   + ++EKP +  + E+  T +T+ + K P   K+ KS   V++K
Sbjct: 1654 KKEKSPEKVEEKPTSPTKKESSPTKKTDDEVKSP--TKKEKSPQTVEEK 1700


>Z54282-4|CAA91055.1|   66|Caenorhabditis elegans Hypothetical
           protein F52E10.4 protein.
          Length = 66

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 56  QFLKNVLDCRNIDYLEIPKMRTMSPNNPVRRCLFPVDDLTEQAKI 190
           Q  ++  D RN D  +  +     P  P RRC+F  DD TE  K+
Sbjct: 17  QLCQDTKDDRNCDDGKKEEFEEPPPRPPTRRCMFYRDD-TEVVKV 60


>Z93393-3|CAB54438.2|  388|Caenorhabditis elegans Hypothetical
           protein Y48E1B.2b protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 374 KPDALKQLENESTPRTNKDEKMPLLRKRRKSLGLVDDKGVRRKISFD 514
           +P AL++L  E      +DEK   L +RRK   L D    R K  +D
Sbjct: 116 QPMALRELHGEEEDEAEEDEKQRKLEERRK-YSLEDPIFARGKWCYD 161


>Z93393-2|CAB07689.2|  890|Caenorhabditis elegans Hypothetical
           protein Y48E1B.2a protein.
          Length = 890

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 374 KPDALKQLENESTPRTNKDEKMPLLRKRRKSLGLVDDKGVRRKISFD 514
           +P AL++L  E      +DEK   L +RRK   L D    R K  +D
Sbjct: 618 QPMALRELHGEEEDEAEEDEKQRKLEERRK-YSLEDPIFARGKWCYD 663


>U42838-1|AAB52492.2|  398|Caenorhabditis elegans Hypothetical
           protein T08G2.2 protein.
          Length = 398

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 229 PCYALSEYVSEVVDLRLFREVVDWE*TSPNWVVR 128
           P + + E++   VD+  +    +WE  S N++VR
Sbjct: 167 PNHCVEEWIDNRVDIIFYERFFNWEIASGNYIVR 200


>Z22178-1|CAA80153.1|  298|Caenorhabditis elegans Hypothetical
           protein F54C8.1 protein.
          Length = 298

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 194 NFANVLRESIARDREEKKRKFNFDFENEVPLDGVYEWYRTDGVND 328
           N ++ L E +A+  ++K R     F N VP+  + E  R+D  +D
Sbjct: 130 NTSSFLLEDVAKGLQDKTRFGGLHFFNPVPVMKLLEVIRSDDTSD 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,886,603
Number of Sequences: 27780
Number of extensions: 254967
Number of successful extensions: 929
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)