Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23c20
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0346 - 17776871-17781445                                         29   1.7  
12_02_0343 - 17748882-17753396                                         29   1.7  
11_06_0730 - 26728241-26729335,26729998-26730660                       29   2.9  
03_05_0220 + 22063411-22063468,22063535-22063545,22064478-220646...    29   2.9  
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799...    28   5.1  
08_02_1475 - 27369088-27369199,27369404-27369651,27369734-273699...    27   6.8  

>12_02_0346 - 17776871-17781445
          Length = 1524

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 384 ELYNCWVLSVLIGRNFRGKSFAFVHGQVWLKYAEGANL 497
           EL   W  S  +G N R      +H Q  L+ AEG ++
Sbjct: 22  ELMEAWAASKKLGPNIRELKLLLLHAQAMLENAEGRDI 59


>12_02_0343 - 17748882-17753396
          Length = 1504

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 384 ELYNCWVLSVLIGRNFRGKSFAFVHGQVWLKYAEGANL 497
           EL   W  S  +G N R      +H Q  L+ AEG ++
Sbjct: 22  ELMEAWAASKKLGPNIRELKLLLLHAQAMLENAEGRDI 59


>11_06_0730 - 26728241-26729335,26729998-26730660
          Length = 585

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/67 (25%), Positives = 28/67 (41%)
 Frame = +3

Query: 273 YYHLPWHVHSSSEHHTADIF*KHLRGRKTNLAESCRKELYNCWVLSVLIGRNFRGKSFAF 452
           Y+     ++ S  +   DIF    R     + +S   E+ +C  L   +  N RGK F  
Sbjct: 347 YFDTVMLIYVSKTYRLEDIF----RDMLEEITQSRHSEISDCRGLEAKLVENLRGKRFLL 402

Query: 453 VHGQVWL 473
           V   +W+
Sbjct: 403 VLDDLWV 409


>03_05_0220 +
           22063411-22063468,22063535-22063545,22064478-22064609,
           22064696-22065799,22065874-22066566,22066968-22067019,
           22067861-22067916,22067917-22068063
          Length = 750

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -2

Query: 432 ESYDQ*EQREPSNYIVLFDTTQQD*FFDLVNVFRKYQPYDVLKRNVHAMVDDSSKISE 259
           E  D  E R    Y + +D   +D  FD V +   ++P D       AM ++SSK S+
Sbjct: 278 EDLDLLEGRSNKQYAIYYDEPIRDEMFDNVLLCSDHKPLDEGVSLSRAMTNNSSKSSQ 335


>02_02_0220 -
           7992124-7992351,7992458-7992562,7993499-7993711,
           7993937-7994196,7994425-7994701,7995226-7995371,
           7995519-7995903,7996680-7996964
          Length = 632

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 150 NDPVVGYAKSYLRCPSRHPQYQL 218
           +DPV+   +  LRC +RH +Y+L
Sbjct: 460 SDPVIAAMEDILRCGTRHMRYRL 482


>08_02_1475 -
           27369088-27369199,27369404-27369651,27369734-27369900,
           27370386-27370621,27371340-27371620
          Length = 347

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 388 YIIAGFSLFLLVVTFAVKALLSYTGKSG 471
           Y++   +LFLL+V F +  ++ + GK+G
Sbjct: 298 YVLWAVALFLLLVGFVIALVMLFKGKNG 325


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,247,757
Number of Sequences: 37544
Number of extensions: 228174
Number of successful extensions: 482
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)