Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23c18
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561 29 2.8
04_03_0987 - 21460169-21460467,21460934-21461495,21462756-214631... 29 2.8
08_02_1560 - 27876886-27877905 29 3.7
02_04_0184 - 20737884-20738179,20738611-20739169,20740009-207404... 29 3.7
07_03_1744 + 29171372-29171438,29172789-29173768 28 5.0
11_06_0499 + 24354810-24355212,24355677-24355735,24355846-243559... 28 6.5
05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594 28 6.5
06_03_0147 + 17236158-17236808 27 8.7
02_04_0653 - 24747959-24748276,24748847-24748959,24749815-247500... 27 8.7
>12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561
Length = 495
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 308 ITTESAKQIEKFRKSKSDDCTIIKESKPAETSSG-FKFFKKAETEGKK 448
+ + ++ + + ++ ++ SKP++ SG +K KK + EGKK
Sbjct: 207 VEDKGKSKVNEANDNLEEEIALLARSKPSKKKSGGYKLMKKLKKEGKK 254
>04_03_0987 -
21460169-21460467,21460934-21461495,21462756-21463190,
21463757-21464185
Length = 574
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 447 FLPSVSAFLKNLKPELVSAGLLSLMIVQ 364
F+PS AFL N +PE+V LL +++Q
Sbjct: 149 FVPSALAFLMNGEPEIVKNFLLKTLLLQ 176
>08_02_1560 - 27876886-27877905
Length = 339
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Frame = -2
Query: 391 GLTFFDDSAVIRFRFSEFFNL-FSALGGDDGHRVVCGLVHFTHEVPDRRLESGPPARLGV 215
G ++D S +RF FSA+G GH V F E ++ P GV
Sbjct: 139 GRAYYDFSPFPGYRFVVLDAYDFSAVGWPRGHPVAAAARRFLDERNPNADKNSPSGLAGV 198
Query: 214 DRPVVTF 194
DR V F
Sbjct: 199 DRRFVMF 205
>02_04_0184 -
20737884-20738179,20738611-20739169,20740009-20740440,
20740556-20740957
Length = 562
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 447 FLPSVSAFLKNLKPELVSAGLLSLMIVQ 364
F+PS AFL N +PE+V LL +++Q
Sbjct: 140 FVPSALAFLMNGEPEIVRHFLLKTLLLQ 167
>07_03_1744 + 29171372-29171438,29172789-29173768
Length = 348
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = -2
Query: 382 FFDDSAVIRFRFSEFFNL-FSALGGDDGHRVVCGLVHFTHEVPDRRLESGPPARLGVDRP 206
++D S +RF FSALG H V + F E ++ P +GVDR
Sbjct: 159 YYDFSPCPEYRFVVLDAYDFSALGWPRDHPVTAEAMKFLEEKNPNSDKNSPDGLVGVDRR 218
Query: 205 VVTF 194
V F
Sbjct: 219 FVMF 222
>11_06_0499 +
24354810-24355212,24355677-24355735,24355846-24355929,
24356040-24356337,24357026-24357203,24357686-24357746,
24358209-24358391,24358581-24358742,24358844-24359037,
24359354-24359504,24359551-24359578,24359845-24360117,
24360660-24360724
Length = 712
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 311 TTESAKQIEKFRK-SKSDDCTIIKESKPAETSSGFKFFKKAETEGKKC 451
TTE+ FR +SD ++ E+ T +K ++ E EGK C
Sbjct: 444 TTETLSVKRAFRAIRRSDVVALVVEAMACITEQDYKIAERIEKEGKAC 491
>05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594
Length = 622
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = -3
Query: 444 LPSVSAFLKNLK-PELVSAGLLSLMIVQSSD-FDFLNFSICLALSVVMTVTASCVVWYTL 271
LP V F L+ PEL +++ S + FL A + + V++ ++W T+
Sbjct: 221 LPKVDRFFAALEGPELDQLKSEEELVLPSDKTWPFLLRFPVSAFGMCLGVSSQAILWKTI 280
Query: 270 LTKSPTAALSLAPR 229
T PTA L + +
Sbjct: 281 ATSGPTAFLHVTTK 294
>06_03_0147 + 17236158-17236808
Length = 216
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 499 EARRQGGLQRLYDEFSAERSQLSARRAHAAPG 594
EAR G L+ LY SAE + A R A PG
Sbjct: 134 EARELGELEALYPCLSAEVEAVEASRLCAVPG 165
>02_04_0653 -
24747959-24748276,24748847-24748959,24749815-24750015,
24750097-24750267,24750354-24750425,24751515-24751543,
24752161-24752303
Length = 348
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 329 QIEKFRKSKSDDCTIIKESKPAETSS 406
QI +F SKS++C I E++P E++S
Sbjct: 69 QIIEFLNSKSNNCEIDGENRPEESNS 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,191,069
Number of Sequences: 37544
Number of extensions: 194825
Number of successful extensions: 733
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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